Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00389 and ECD_00390 are separated by 269 nucleotides ECD_00390 and ECD_00391 are separated by 155 nucleotides
ECD_00389: ECD_00389 - ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease, at 425,110 to 426,384
_00389
ECD_00390: ECD_00390 - putative transposase insL for insertion sequence IS186, at 426,654 to 427,766
_00390
ECD_00391: ECD_00391 - DNA-binding ATP-dependent protease La, at 427,922 to 430,276
_00391
Position (kb) 426
427
428 Strain fitness (log2 ratio) -2
-1
0
1 at 425.760 kb on + strand, within ECD_00389 at 426.021 kb on + strand, within ECD_00389 at 426.236 kb on + strand, within ECD_00389 at 426.262 kb on + strand at 426.314 kb on + strand at 426.404 kb on + strand at 426.486 kb on - strand at 427.791 kb on + strand at 427.794 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.838 kb on + strand at 427.839 kb on - strand at 427.839 kb on - strand at 427.839 kb on - strand at 427.839 kb on - strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.846 kb on + strand at 427.847 kb on - strand at 427.847 kb on - strand at 427.847 kb on - strand at 427.847 kb on - strand at 427.847 kb on - strand at 427.853 kb on + strand at 427.853 kb on + strand at 427.856 kb on + strand at 427.857 kb on - strand at 427.857 kb on - strand at 427.857 kb on - strand at 427.922 kb on - strand at 428.007 kb on + strand at 428.149 kb on + strand at 428.150 kb on - strand at 428.218 kb on + strand, within ECD_00391 at 428.268 kb on - strand, within ECD_00391 at 428.318 kb on - strand, within ECD_00391 at 428.392 kb on + strand, within ECD_00391 at 428.392 kb on + strand, within ECD_00391 at 428.437 kb on + strand, within ECD_00391 at 428.437 kb on + strand, within ECD_00391 at 428.437 kb on + strand, within ECD_00391 at 428.438 kb on - strand, within ECD_00391 at 428.606 kb on + strand, within ECD_00391 at 428.606 kb on + strand, within ECD_00391
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 425,760 + ECD_00389 0.51 -0.4 426,021 + ECD_00389 0.71 +0.9 426,236 + ECD_00389 0.88 +0.4 426,262 + +1.2 426,314 + -0.1 426,404 + +0.0 426,486 - -1.0 427,791 + +1.0 427,794 + -0.6 427,838 + -0.1 427,838 + -0.1 427,838 + -0.2 427,838 + -0.2 427,838 + -0.0 427,838 + -0.3 427,838 + +0.1 427,838 + +0.2 427,839 - +0.3 427,839 - +0.1 427,839 - -0.1 427,839 - -1.8 427,846 + +0.3 427,846 + -0.0 427,846 + +0.5 427,846 + -0.2 427,846 + -0.8 427,846 + -0.4 427,846 + -0.0 427,846 + +0.3 427,846 + +0.4 427,846 + +0.1 427,846 + -0.0 427,847 - +1.3 427,847 - -0.4 427,847 - +0.9 427,847 - +0.0 427,847 - +0.2 427,853 + -0.2 427,853 + +0.6 427,856 + +0.1 427,857 - -0.4 427,857 - +0.5 427,857 - +0.8 427,922 - +0.4 428,007 + -0.0 428,149 + +0.0 428,150 - +0.6 428,218 + ECD_00391 0.13 -0.5 428,268 - ECD_00391 0.15 -1.7 428,318 - ECD_00391 0.17 +0.5 428,392 + ECD_00391 0.20 -0.0 428,392 + ECD_00391 0.20 +1.4 428,437 + ECD_00391 0.22 -0.9 428,437 + ECD_00391 0.22 -0.3 428,437 + ECD_00391 0.22 -0.4 428,438 - ECD_00391 0.22 +0.5 428,606 + ECD_00391 0.29 -0.4 428,606 + ECD_00391 0.29 -0.4
Or see this region's nucleotide sequence