Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00363 and ECD_00364 are separated by 19 nucleotides ECD_00364 and ECD_00365 are separated by 77 nucleotides ECD_00365 and ECD_00366 overlap by 23 nucleotides ECD_00366 and ECD_00367 are separated by 53 nucleotides
ECD_00363: ECD_00363 - riboflavin synthase beta chain, at 400,048 to 400,518
_00363
ECD_00364: ECD_00364 - transcription antitermination protein, at 400,538 to 400,957
_00364
ECD_00365: ECD_00365 - thiamine monophosphate kinase, at 401,035 to 402,012
_00365
ECD_00366: ECD_00366 - phosphatidylglycerophosphatase A, at 401,990 to 402,508
_00366
ECD_00367: ECD_00367 - 2-carboxybenzaldehyde reductase, at 402,562 to 403,536
_00367
Position (kb) 401
402
403 Strain fitness (log2 ratio) -1
0
1 at 401.034 kb on + strand at 402.043 kb on + strand, within ECD_00366 at 402.043 kb on + strand, within ECD_00366 at 402.057 kb on + strand, within ECD_00366 at 402.084 kb on + strand, within ECD_00366 at 402.137 kb on + strand, within ECD_00366 at 402.206 kb on + strand, within ECD_00366 at 402.507 kb on - strand at 402.682 kb on - strand, within ECD_00367 at 402.933 kb on - strand, within ECD_00367
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 401,034 + -1.4 402,043 + ECD_00366 0.10 +1.3 402,043 + ECD_00366 0.10 +0.5 402,057 + ECD_00366 0.13 +0.9 402,084 + ECD_00366 0.18 -1.5 402,137 + ECD_00366 0.28 -0.1 402,206 + ECD_00366 0.42 +0.6 402,507 - -0.3 402,682 - ECD_00367 0.12 -1.3 402,933 - ECD_00367 0.38 +1.3
Or see this region's nucleotide sequence