Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00243 and ECD_00244 overlap by 4 nucleotides ECD_00244 and ECD_00245 overlap by 4 nucleotides ECD_00245 and ECD_00246 are separated by 416 nucleotides
ECD_00243: ECD_00243 - PaoABC aldehyde oxidoreductase, Moco-containing subunit, at 268,923 to 271,121
_00243
ECD_00244: ECD_00244 - PaoABC aldehyde oxidoreductase, FAD-containing subunit, at 271,118 to 272,074
_00244
ECD_00245: ECD_00245 - PaoABC aldehyde oxidoreductase, 2Fe-2S subunit, at 272,071 to 272,760
_00245
ECD_00246: ECD_00246 - DUF1440 family inner membrane acid resistance protein, at 273,177 to 273,791
_00246
Position (kb) 272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 271.285 kb on + strand, within ECD_00244 at 271.286 kb on - strand, within ECD_00244 at 271.292 kb on + strand, within ECD_00244 at 271.334 kb on - strand, within ECD_00244 at 271.388 kb on - strand, within ECD_00244 at 271.388 kb on - strand, within ECD_00244 at 271.393 kb on - strand, within ECD_00244 at 271.393 kb on - strand, within ECD_00244 at 271.396 kb on + strand, within ECD_00244 at 271.396 kb on + strand, within ECD_00244 at 271.397 kb on - strand, within ECD_00244 at 271.397 kb on - strand, within ECD_00244 at 271.707 kb on + strand, within ECD_00244 at 271.763 kb on - strand, within ECD_00244 at 271.766 kb on + strand, within ECD_00244 at 271.766 kb on + strand, within ECD_00244 at 272.059 kb on - strand at 272.119 kb on - strand at 272.123 kb on + strand at 272.124 kb on - strand at 272.154 kb on + strand, within ECD_00245 at 272.155 kb on - strand, within ECD_00245 at 272.155 kb on - strand, within ECD_00245 at 272.337 kb on + strand, within ECD_00245 at 272.338 kb on - strand, within ECD_00245 at 272.338 kb on - strand, within ECD_00245 at 272.582 kb on - strand, within ECD_00245 at 272.599 kb on - strand, within ECD_00245 at 272.626 kb on - strand, within ECD_00245 at 272.626 kb on - strand, within ECD_00245 at 272.865 kb on + strand at 272.897 kb on + strand at 272.898 kb on - strand at 272.942 kb on - strand at 273.056 kb on + strand at 273.057 kb on - strand at 273.148 kb on + strand at 273.161 kb on + strand at 273.176 kb on + strand at 273.450 kb on + strand, within ECD_00246 at 273.452 kb on + strand, within ECD_00246 at 273.473 kb on + strand, within ECD_00246 at 273.694 kb on + strand, within ECD_00246 at 273.746 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 271,285 + ECD_00244 0.17 -0.4 271,286 - ECD_00244 0.18 -0.2 271,292 + ECD_00244 0.18 +0.7 271,334 - ECD_00244 0.23 +0.6 271,388 - ECD_00244 0.28 -0.2 271,388 - ECD_00244 0.28 -0.6 271,393 - ECD_00244 0.29 -2.0 271,393 - ECD_00244 0.29 +0.2 271,396 + ECD_00244 0.29 +0.2 271,396 + ECD_00244 0.29 +0.8 271,397 - ECD_00244 0.29 +0.0 271,397 - ECD_00244 0.29 +0.4 271,707 + ECD_00244 0.62 -0.2 271,763 - ECD_00244 0.67 -1.0 271,766 + ECD_00244 0.68 -0.7 271,766 + ECD_00244 0.68 +0.5 272,059 - -0.2 272,119 - +0.1 272,123 + +0.3 272,124 - +0.9 272,154 + ECD_00245 0.12 +0.4 272,155 - ECD_00245 0.12 +0.0 272,155 - ECD_00245 0.12 +1.2 272,337 + ECD_00245 0.39 +0.9 272,338 - ECD_00245 0.39 -0.8 272,338 - ECD_00245 0.39 +0.1 272,582 - ECD_00245 0.74 +1.0 272,599 - ECD_00245 0.77 +0.2 272,626 - ECD_00245 0.80 +1.2 272,626 - ECD_00245 0.80 +0.6 272,865 + -0.1 272,897 + -0.0 272,898 - +0.1 272,942 - +0.7 273,056 + +0.1 273,057 - +0.7 273,148 + +1.2 273,161 + -0.2 273,176 + -0.1 273,450 + ECD_00246 0.44 -0.2 273,452 + ECD_00246 0.45 +0.6 273,473 + ECD_00246 0.48 +0.5 273,694 + ECD_00246 0.84 +0.3 273,746 + +0.4
Or see this region's nucleotide sequence