Strain Fitness in Escherichia coli BL21 around ECD_00144

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00143 and ECD_00144 are separated by 36 nucleotidesECD_00144 and ECD_00145 are separated by 177 nucleotidesECD_00145 and ECD_00146 are separated by 14 nucleotides ECD_00143: ECD_00143 - glutamyl-Q tRNA(Asp) synthetase, at 162,038 to 162,964 _00143 ECD_00144: ECD_00144 - transcriptional regulator of rRNA transcription; DnaK suppressor protein, at 163,001 to 163,456 _00144 ECD_00145: ECD_00145 - sugar fermentation stimulation protein A, at 163,634 to 164,338 _00145 ECD_00146: ECD_00146 - 2'-5' RNA ligase, at 164,353 to 164,883 _00146 Position (kb) 163 164Strain fitness (log2 ratio) -2 -1 0 1 2at 162.292 kb on - strand, within ECD_00143at 162.421 kb on - strand, within ECD_00143at 162.421 kb on - strand, within ECD_00143at 162.421 kb on - strand, within ECD_00143at 162.592 kb on - strand, within ECD_00143at 162.592 kb on - strand, within ECD_00143at 162.592 kb on - strand, within ECD_00143at 162.637 kb on - strand, within ECD_00143at 162.640 kb on - strand, within ECD_00143at 162.644 kb on + strand, within ECD_00143at 162.645 kb on - strand, within ECD_00143at 162.757 kb on + strand, within ECD_00143at 162.804 kb on - strand, within ECD_00143at 162.805 kb on + strand, within ECD_00143at 162.805 kb on + strand, within ECD_00143at 162.806 kb on - strand, within ECD_00143at 162.806 kb on - strand, within ECD_00143at 162.806 kb on - strand, within ECD_00143at 162.810 kb on - strand, within ECD_00143at 162.846 kb on + strand, within ECD_00143at 162.847 kb on - strand, within ECD_00143at 162.847 kb on - strand, within ECD_00143at 162.916 kb on + strandat 162.916 kb on + strandat 162.917 kb on - strandat 162.918 kb on + strandat 162.918 kb on + strandat 162.918 kb on + strandat 162.918 kb on + strandat 162.918 kb on + strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.919 kb on - strandat 162.999 kb on - strandat 163.518 kb on - strandat 163.518 kb on - strandat 163.522 kb on - strandat 163.548 kb on - strandat 163.551 kb on + strandat 163.611 kb on - strandat 163.628 kb on - strandat 163.628 kb on - strandat 163.628 kb on - strandat 163.628 kb on - strandat 163.635 kb on + strandat 163.636 kb on - strandat 163.642 kb on + strandat 163.737 kb on - strand, within ECD_00145at 163.737 kb on - strand, within ECD_00145at 163.784 kb on - strand, within ECD_00145at 163.939 kb on + strand, within ECD_00145at 163.941 kb on + strand, within ECD_00145at 163.941 kb on + strand, within ECD_00145at 163.941 kb on + strand, within ECD_00145at 163.942 kb on - strand, within ECD_00145at 163.942 kb on - strand, within ECD_00145at 163.942 kb on - strand, within ECD_00145at 163.972 kb on + strand, within ECD_00145at 163.973 kb on - strand, within ECD_00145at 163.973 kb on - strand, within ECD_00145at 164.026 kb on + strand, within ECD_00145at 164.027 kb on - strand, within ECD_00145at 164.027 kb on - strand, within ECD_00145at 164.027 kb on - strand, within ECD_00145at 164.027 kb on - strand, within ECD_00145at 164.027 kb on - strand, within ECD_00145at 164.108 kb on - strand, within ECD_00145at 164.241 kb on - strand, within ECD_00145at 164.241 kb on - strand, within ECD_00145at 164.241 kb on - strand, within ECD_00145at 164.293 kb on - strandat 164.293 kb on - strandat 164.352 kb on - strandat 164.420 kb on + strand, within ECD_00146at 164.421 kb on - strand, within ECD_00146at 164.444 kb on + strand, within ECD_00146at 164.445 kb on - strand, within ECD_00146at 164.455 kb on - strand, within ECD_00146at 164.455 kb on - strand, within ECD_00146

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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162,292 - ECD_00143 0.27 -1.0
162,421 - ECD_00143 0.41 -0.4
162,421 - ECD_00143 0.41 -0.2
162,421 - ECD_00143 0.41 -1.3
162,592 - ECD_00143 0.60 -1.2
162,592 - ECD_00143 0.60 -2.3
162,592 - ECD_00143 0.60 -1.2
162,637 - ECD_00143 0.65 -2.6
162,640 - ECD_00143 0.65 +0.6
162,644 + ECD_00143 0.65 -0.9
162,645 - ECD_00143 0.65 +0.1
162,757 + ECD_00143 0.78 +0.4
162,804 - ECD_00143 0.83 +1.1
162,805 + ECD_00143 0.83 +0.9
162,805 + ECD_00143 0.83 -0.3
162,806 - ECD_00143 0.83 +1.0
162,806 - ECD_00143 0.83 +0.6
162,806 - ECD_00143 0.83 +0.5
162,810 - ECD_00143 0.83 -0.1
162,846 + ECD_00143 0.87 +0.1
162,847 - ECD_00143 0.87 +0.5
162,847 - ECD_00143 0.87 +1.1
162,916 + -0.1
162,916 + -0.6
162,917 - -0.1
162,918 + -0.9
162,918 + -0.4
162,918 + -1.1
162,918 + -0.5
162,918 + -0.2
162,919 - +1.9
162,919 - +0.4
162,919 - +0.3
162,919 - +0.1
162,919 - +1.0
162,919 - -0.2
162,919 - +0.5
162,919 - +0.1
162,999 - +0.8
163,518 - -2.3
163,518 - -2.0
163,522 - -0.8
163,548 - -0.0
163,551 + +0.0
163,611 - -0.7
163,628 - +0.4
163,628 - -0.3
163,628 - +0.4
163,628 - -1.2
163,635 + -0.2
163,636 - +0.1
163,642 + +0.2
163,737 - ECD_00145 0.15 +1.1
163,737 - ECD_00145 0.15 -0.7
163,784 - ECD_00145 0.21 +0.5
163,939 + ECD_00145 0.43 +0.5
163,941 + ECD_00145 0.44 +1.2
163,941 + ECD_00145 0.44 -2.7
163,941 + ECD_00145 0.44 -0.9
163,942 - ECD_00145 0.44 +0.2
163,942 - ECD_00145 0.44 -0.4
163,942 - ECD_00145 0.44 +1.1
163,972 + ECD_00145 0.48 -0.1
163,973 - ECD_00145 0.48 +0.1
163,973 - ECD_00145 0.48 +0.7
164,026 + ECD_00145 0.56 -0.4
164,027 - ECD_00145 0.56 +1.1
164,027 - ECD_00145 0.56 -0.1
164,027 - ECD_00145 0.56 +0.4
164,027 - ECD_00145 0.56 +0.5
164,027 - ECD_00145 0.56 +0.4
164,108 - ECD_00145 0.67 -0.4
164,241 - ECD_00145 0.86 +0.1
164,241 - ECD_00145 0.86 -1.2
164,241 - ECD_00145 0.86 +0.3
164,293 - +1.5
164,293 - -0.3
164,352 - +0.5
164,420 + ECD_00146 0.13 +1.6
164,421 - ECD_00146 0.13 +0.2
164,444 + ECD_00146 0.17 -0.2
164,445 - ECD_00146 0.17 +0.1
164,455 - ECD_00146 0.19 +0.2
164,455 - ECD_00146 0.19 -1.9

Or see this region's nucleotide sequence