Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00114 and ECD_00115 are separated by 324 nucleotides ECD_00115 and ECD_00116 are separated by 70 nucleotides
ECD_00114: ECD_00114 - pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2, at 128,500 to 130,392
_00114
ECD_00115: ECD_00115 - dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase, at 130,717 to 132,141
_00115
ECD_00116: ECD_00116 - DUF3300 family protein, at 132,212 to 134,065
_00116
Position (kb) 130
131
132
133 Strain fitness (log2 ratio) -2
-1
0
1 at 130.391 kb on - strand at 132.140 kb on - strand at 132.170 kb on + strand at 132.170 kb on + strand at 132.293 kb on - strand at 132.298 kb on + strand at 132.739 kb on - strand, within ECD_00116 at 132.748 kb on - strand, within ECD_00116 at 132.763 kb on + strand, within ECD_00116 at 132.951 kb on + strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.970 kb on - strand, within ECD_00116 at 132.995 kb on - strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.006 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.113 kb on + strand, within ECD_00116 at 133.114 kb on - strand, within ECD_00116
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 130,391 - -1.1 132,140 - -1.3 132,170 + -0.3 132,170 + -0.7 132,293 - +0.8 132,298 + +0.2 132,739 - ECD_00116 0.28 -0.2 132,748 - ECD_00116 0.29 +0.1 132,763 + ECD_00116 0.30 +0.3 132,951 + ECD_00116 0.40 -2.6 132,970 - ECD_00116 0.41 -0.0 132,970 - ECD_00116 0.41 -2.1 132,995 - ECD_00116 0.42 +0.9 133,006 + ECD_00116 0.43 -0.5 133,006 + ECD_00116 0.43 -1.1 133,113 + ECD_00116 0.49 +0.1 133,113 + ECD_00116 0.49 +0.5 133,114 - ECD_00116 0.49 -0.4
Or see this region's nucleotide sequence