Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00101 and ECD_00102 are separated by 9 nucleotides ECD_00102 and ECD_00103 overlap by 1 nucleotides ECD_00103 and ECD_00104 are separated by 224 nucleotides
ECD_00101: ECD_00101 - DNA gyrase inhibitor, at 114,454 to 114,651
_00101
ECD_00102: ECD_00102 - FtsZ stabilizer, at 114,661 to 115,404
_00102
ECD_00103: ECD_00103 - dephospho-CoA kinase, at 115,404 to 116,024
_00103
ECD_00104: ECD_00104 - GMP reductase, at 116,249 to 117,292
_00104
Position (kb)
115
116
117 Strain fitness (log2 ratio)
-1
0
1
2 at 114.432 kb on + strand at 114.433 kb on - strand at 114.640 kb on - strand at 114.640 kb on - strand at 114.640 kb on - strand at 114.663 kb on - strand at 114.663 kb on - strand at 114.751 kb on - strand, within ECD_00102 at 114.751 kb on - strand, within ECD_00102 at 114.751 kb on - strand, within ECD_00102 at 114.751 kb on - strand, within ECD_00102 at 114.900 kb on + strand, within ECD_00102 at 114.900 kb on + strand, within ECD_00102 at 114.901 kb on - strand, within ECD_00102 at 114.901 kb on - strand, within ECD_00102 at 114.901 kb on - strand, within ECD_00102 at 114.901 kb on - strand, within ECD_00102 at 114.944 kb on - strand, within ECD_00102 at 114.998 kb on - strand, within ECD_00102 at 115.100 kb on - strand, within ECD_00102 at 115.102 kb on + strand, within ECD_00102 at 115.143 kb on + strand, within ECD_00102 at 115.189 kb on - strand, within ECD_00102 at 115.357 kb on - strand at 115.357 kb on - strand at 115.357 kb on - strand at 115.373 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.114 kb on + strand at 116.128 kb on - strand at 116.187 kb on + strand at 116.188 kb on - strand at 116.223 kb on + strand at 116.223 kb on + strand at 116.223 kb on + strand at 116.224 kb on - strand at 116.255 kb on - strand at 116.484 kb on - strand, within ECD_00104 at 116.629 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.725 kb on - strand, within ECD_00104 at 116.725 kb on - strand, within ECD_00104 at 116.806 kb on + strand, within ECD_00104 at 116.806 kb on + strand, within ECD_00104
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 114,432 + -0.9 114,433 - +0.5 114,640 - +1.7 114,640 - +0.6 114,640 - +0.0 114,663 - +0.1 114,663 - +0.0 114,751 - ECD_00102 0.12 -0.3 114,751 - ECD_00102 0.12 +0.3 114,751 - ECD_00102 0.12 -0.1 114,751 - ECD_00102 0.12 +0.1 114,900 + ECD_00102 0.32 -0.3 114,900 + ECD_00102 0.32 -0.7 114,901 - ECD_00102 0.32 +0.2 114,901 - ECD_00102 0.32 -0.5 114,901 - ECD_00102 0.32 +0.6 114,901 - ECD_00102 0.32 +0.0 114,944 - ECD_00102 0.38 -0.4 114,998 - ECD_00102 0.45 -0.7 115,100 - ECD_00102 0.59 +1.1 115,102 + ECD_00102 0.59 -0.8 115,143 + ECD_00102 0.65 +1.8 115,189 - ECD_00102 0.71 +0.8 115,357 - +0.1 115,357 - -0.3 115,357 - -0.4 115,373 - -0.8 116,014 - -0.2 116,014 - +0.5 116,014 - -0.1 116,014 - -0.8 116,014 - +0.1 116,114 + -1.2 116,128 - +0.3 116,187 + +0.6 116,188 - +0.0 116,223 + -0.3 116,223 + +0.3 116,223 + +0.3 116,224 - +1.0 116,255 - +0.0 116,484 - ECD_00104 0.23 -1.0 116,629 + ECD_00104 0.36 -0.2 116,724 + ECD_00104 0.45 +0.0 116,724 + ECD_00104 0.45 +0.1 116,724 + ECD_00104 0.45 -0.3 116,724 + ECD_00104 0.45 +1.0 116,724 + ECD_00104 0.45 +0.1 116,725 - ECD_00104 0.46 +1.2 116,725 - ECD_00104 0.46 -0.1 116,806 + ECD_00104 0.53 -0.0 116,806 + ECD_00104 0.53 -0.8
Or see this region's nucleotide sequence