Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00034 and ECD_00035 are separated by 166 nucleotides ECD_00035 and ECD_00036 are separated by 455 nucleotides
ECD_00034: ECD_00034 - ribonucleoside hydrolase 3, at 31,365 to 32,279
_00034
ECD_00035: ECD_00035 - dihydrodipicolinate reductase, at 32,446 to 33,267
_00035
ECD_00036: ECD_00036 - carbamoyl phosphate synthetase small subunit, glutamine amidotransferase, at 33,723 to 34,871
_00036
Position (kb) 32
33
34 Strain fitness (log2 ratio) -1
0
1
2 at 31.479 kb on - strand, within ECD_00034 at 31.718 kb on + strand, within ECD_00034 at 31.748 kb on + strand, within ECD_00034 at 31.760 kb on - strand, within ECD_00034 at 31.760 kb on - strand, within ECD_00034 at 31.838 kb on + strand, within ECD_00034 at 31.838 kb on + strand, within ECD_00034 at 31.839 kb on - strand, within ECD_00034 at 31.839 kb on - strand, within ECD_00034 at 31.839 kb on - strand, within ECD_00034 at 31.898 kb on + strand, within ECD_00034 at 31.963 kb on - strand, within ECD_00034 at 32.019 kb on - strand, within ECD_00034 at 32.102 kb on - strand, within ECD_00034 at 32.102 kb on - strand, within ECD_00034 at 32.175 kb on - strand, within ECD_00034 at 32.206 kb on + strand at 32.360 kb on + strand at 32.364 kb on + strand at 33.864 kb on + strand, within ECD_00036 at 33.864 kb on + strand, within ECD_00036 at 33.881 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.888 kb on - strand, within ECD_00036 at 33.888 kb on - strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.892 kb on - strand, within ECD_00036 at 33.946 kb on + strand, within ECD_00036 at 34.004 kb on + strand, within ECD_00036 at 34.038 kb on - strand, within ECD_00036 at 34.224 kb on + strand, within ECD_00036 at 34.226 kb on + strand, within ECD_00036
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 31,479 - ECD_00034 0.12 -1.3 31,718 + ECD_00034 0.39 -0.4 31,748 + ECD_00034 0.42 +0.5 31,760 - ECD_00034 0.43 +0.5 31,760 - ECD_00034 0.43 +0.4 31,838 + ECD_00034 0.52 -0.6 31,838 + ECD_00034 0.52 +0.2 31,839 - ECD_00034 0.52 +0.2 31,839 - ECD_00034 0.52 -0.8 31,839 - ECD_00034 0.52 +0.0 31,898 + ECD_00034 0.58 +0.5 31,963 - ECD_00034 0.65 -0.6 32,019 - ECD_00034 0.71 -1.1 32,102 - ECD_00034 0.81 -0.2 32,102 - ECD_00034 0.81 -1.0 32,175 - ECD_00034 0.89 +0.2 32,206 + -0.0 32,360 + -0.0 32,364 + +0.1 33,864 + ECD_00036 0.12 +0.9 33,864 + ECD_00036 0.12 +2.0 33,881 + ECD_00036 0.14 +0.6 33,887 + ECD_00036 0.14 +1.6 33,887 + ECD_00036 0.14 +1.5 33,887 + ECD_00036 0.14 +1.2 33,887 + ECD_00036 0.14 +0.9 33,888 - ECD_00036 0.14 -0.4 33,888 - ECD_00036 0.14 +0.8 33,891 + ECD_00036 0.15 +2.7 33,891 + ECD_00036 0.15 +0.7 33,892 - ECD_00036 0.15 +0.3 33,946 + ECD_00036 0.19 +1.0 34,004 + ECD_00036 0.24 +1.7 34,038 - ECD_00036 0.27 +0.7 34,224 + ECD_00036 0.44 +1.3 34,226 + ECD_00036 0.44 +0.7
Or see this region's nucleotide sequence