Strain Fitness in Escherichia coli BL21 around ECD_00017

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00016 and ECD_00017 are separated by 193 nucleotidesECD_00017 and ECD_00018 are separated by 529 nucleotides ECD_00016: ECD_00016 - IS186 hypothetical protein, at 15,443 to 16,555 _00016 ECD_00017: ECD_00017 - regulatory protein for HokC, at 16,749 to 16,958 _00017 ECD_00018: ECD_00018 - sodium-proton antiporter, at 17,488 to 18,654 _00018 Position (kb) 16 17Strain fitness (log2 ratio) -1 0 1at 16.762 kb on + strandat 16.857 kb on - strand, within ECD_00017at 16.857 kb on - strand, within ECD_00017at 16.890 kb on - strand, within ECD_00017at 16.890 kb on - strand, within ECD_00017at 16.890 kb on - strand, within ECD_00017at 16.922 kb on + strand, within ECD_00017at 16.923 kb on - strand, within ECD_00017at 16.932 kb on - strand, within ECD_00017at 16.943 kb on + strandat 16.944 kb on - strandat 16.944 kb on - strandat 16.944 kb on - strandat 16.944 kb on - strandat 16.958 kb on + strandat 16.958 kb on + strandat 16.959 kb on - strandat 16.960 kb on + strandat 16.978 kb on + strandat 17.063 kb on - strandat 17.414 kb on - strandat 17.759 kb on + strand, within ECD_00018at 17.836 kb on + strand, within ECD_00018

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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16,762 + +0.7
16,857 - ECD_00017 0.51 +0.3
16,857 - ECD_00017 0.51 +0.6
16,890 - ECD_00017 0.67 +0.5
16,890 - ECD_00017 0.67 +0.4
16,890 - ECD_00017 0.67 +0.3
16,922 + ECD_00017 0.82 -0.1
16,923 - ECD_00017 0.83 +0.3
16,932 - ECD_00017 0.87 -0.8
16,943 + +0.2
16,944 - -0.1
16,944 - -0.6
16,944 - -0.2
16,944 - -0.0
16,958 + -0.4
16,958 + +0.2
16,959 - -0.8
16,960 + +0.2
16,978 + -0.5
17,063 - +0.3
17,414 - +0.6
17,759 + ECD_00018 0.23 -1.0
17,836 + ECD_00018 0.30 -0.3

Or see this region's nucleotide sequence