Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20505 and ABIE41_RS20510 overlap by 4 nucleotides ABIE41_RS20510 and ABIE41_RS20515 are separated by 4 nucleotides ABIE41_RS20515 and ABIE41_RS20520 are separated by 102 nucleotides
ABIE41_RS20505: ABIE41_RS20505 - ABC transporter ATP-binding protein, at 4,215,674 to 4,216,750
_RS20505
ABIE41_RS20510: ABIE41_RS20510 - sugar ABC transporter permease, at 4,216,747 to 4,217,637
_RS20510
ABIE41_RS20515: ABIE41_RS20515 - ABC transporter permease subunit, at 4,217,642 to 4,218,475
_RS20515
ABIE41_RS20520: ABIE41_RS20520 - extracellular solute-binding protein, at 4,218,578 to 4,219,768
_RS20520
Position (kb) 4217
4218
4219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4216.653 kb on + strand at 4216.653 kb on + strand at 4216.653 kb on + strand at 4216.654 kb on - strand at 4216.861 kb on + strand, within ABIE41_RS20510 at 4216.861 kb on + strand, within ABIE41_RS20510 at 4216.861 kb on + strand, within ABIE41_RS20510 at 4216.862 kb on - strand, within ABIE41_RS20510 at 4216.862 kb on - strand, within ABIE41_RS20510 at 4216.862 kb on - strand, within ABIE41_RS20510 at 4216.891 kb on + strand, within ABIE41_RS20510 at 4216.925 kb on - strand, within ABIE41_RS20510 at 4216.925 kb on - strand, within ABIE41_RS20510 at 4216.925 kb on - strand, within ABIE41_RS20510 at 4216.954 kb on + strand, within ABIE41_RS20510 at 4216.954 kb on + strand, within ABIE41_RS20510 at 4217.088 kb on + strand, within ABIE41_RS20510 at 4217.088 kb on + strand, within ABIE41_RS20510 at 4217.212 kb on + strand, within ABIE41_RS20510 at 4217.212 kb on + strand, within ABIE41_RS20510 at 4217.213 kb on - strand, within ABIE41_RS20510 at 4217.512 kb on + strand, within ABIE41_RS20510 at 4217.513 kb on - strand, within ABIE41_RS20510 at 4217.513 kb on - strand, within ABIE41_RS20510 at 4217.518 kb on + strand, within ABIE41_RS20510 at 4217.518 kb on + strand, within ABIE41_RS20510 at 4217.605 kb on + strand at 4217.606 kb on - strand at 4217.606 kb on - strand at 4217.810 kb on + strand, within ABIE41_RS20515 at 4217.810 kb on + strand, within ABIE41_RS20515 at 4217.810 kb on + strand, within ABIE41_RS20515 at 4217.810 kb on + strand, within ABIE41_RS20515 at 4217.810 kb on + strand, within ABIE41_RS20515 at 4217.810 kb on + strand, within ABIE41_RS20515 at 4217.811 kb on - strand, within ABIE41_RS20515 at 4217.813 kb on + strand, within ABIE41_RS20515 at 4217.814 kb on - strand, within ABIE41_RS20515 at 4217.814 kb on - strand, within ABIE41_RS20515 at 4217.814 kb on - strand, within ABIE41_RS20515 at 4217.847 kb on + strand, within ABIE41_RS20515 at 4217.848 kb on - strand, within ABIE41_RS20515 at 4217.918 kb on + strand, within ABIE41_RS20515 at 4217.919 kb on - strand, within ABIE41_RS20515 at 4217.919 kb on - strand, within ABIE41_RS20515 at 4218.002 kb on + strand, within ABIE41_RS20515 at 4218.002 kb on + strand, within ABIE41_RS20515 at 4218.029 kb on + strand, within ABIE41_RS20515 at 4218.029 kb on + strand, within ABIE41_RS20515 at 4218.030 kb on - strand, within ABIE41_RS20515 at 4218.030 kb on - strand, within ABIE41_RS20515 at 4218.190 kb on + strand, within ABIE41_RS20515 at 4218.326 kb on + strand, within ABIE41_RS20515 at 4218.327 kb on - strand, within ABIE41_RS20515 at 4218.327 kb on - strand, within ABIE41_RS20515 at 4218.330 kb on - strand, within ABIE41_RS20515 at 4218.330 kb on - strand, within ABIE41_RS20515 at 4218.389 kb on + strand, within ABIE41_RS20515 at 4218.389 kb on + strand, within ABIE41_RS20515 at 4218.389 kb on + strand, within ABIE41_RS20515 at 4218.390 kb on - strand, within ABIE41_RS20515 at 4218.390 kb on - strand, within ABIE41_RS20515 at 4218.390 kb on - strand, within ABIE41_RS20515 at 4218.390 kb on - strand, within ABIE41_RS20515 at 4218.390 kb on - strand, within ABIE41_RS20515 at 4218.550 kb on + strand at 4218.550 kb on + strand at 4218.965 kb on + strand, within ABIE41_RS20520 at 4218.965 kb on + strand, within ABIE41_RS20520 at 4218.965 kb on + strand, within ABIE41_RS20520 at 4218.965 kb on + strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4218.966 kb on - strand, within ABIE41_RS20520 at 4219.028 kb on + strand, within ABIE41_RS20520 at 4219.029 kb on - strand, within ABIE41_RS20520 at 4219.029 kb on - strand, within ABIE41_RS20520 at 4219.029 kb on - strand, within ABIE41_RS20520 at 4219.055 kb on + strand, within ABIE41_RS20520 at 4219.055 kb on + strand, within ABIE41_RS20520 at 4219.139 kb on + strand, within ABIE41_RS20520 at 4219.140 kb on - strand, within ABIE41_RS20520 at 4219.193 kb on + strand, within ABIE41_RS20520 at 4219.193 kb on + strand, within ABIE41_RS20520 at 4219.193 kb on + strand, within ABIE41_RS20520 at 4219.194 kb on - strand, within ABIE41_RS20520 at 4219.194 kb on - strand, within ABIE41_RS20520 at 4219.283 kb on + strand, within ABIE41_RS20520 at 4219.283 kb on + strand, within ABIE41_RS20520 at 4219.283 kb on + strand, within ABIE41_RS20520 at 4219.284 kb on - strand, within ABIE41_RS20520 at 4219.284 kb on - strand, within ABIE41_RS20520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,216,653 + +1.6 4,216,653 + +0.7 4,216,653 + -2.0 4,216,654 - +1.1 4,216,861 + ABIE41_RS20510 0.13 +0.2 4,216,861 + ABIE41_RS20510 0.13 +0.3 4,216,861 + ABIE41_RS20510 0.13 -0.5 4,216,862 - ABIE41_RS20510 0.13 -1.1 4,216,862 - ABIE41_RS20510 0.13 +0.0 4,216,862 - ABIE41_RS20510 0.13 +0.4 4,216,891 + ABIE41_RS20510 0.16 +0.9 4,216,925 - ABIE41_RS20510 0.20 -0.3 4,216,925 - ABIE41_RS20510 0.20 -0.1 4,216,925 - ABIE41_RS20510 0.20 +1.3 4,216,954 + ABIE41_RS20510 0.23 -0.5 4,216,954 + ABIE41_RS20510 0.23 -1.1 4,217,088 + ABIE41_RS20510 0.38 -2.6 4,217,088 + ABIE41_RS20510 0.38 +0.8 4,217,212 + ABIE41_RS20510 0.52 +1.6 4,217,212 + ABIE41_RS20510 0.52 +0.5 4,217,213 - ABIE41_RS20510 0.52 +0.4 4,217,512 + ABIE41_RS20510 0.86 +0.1 4,217,513 - ABIE41_RS20510 0.86 +0.0 4,217,513 - ABIE41_RS20510 0.86 -0.6 4,217,518 + ABIE41_RS20510 0.87 -0.4 4,217,518 + ABIE41_RS20510 0.87 -0.5 4,217,605 + -0.1 4,217,606 - +0.4 4,217,606 - -1.1 4,217,810 + ABIE41_RS20515 0.20 -1.4 4,217,810 + ABIE41_RS20515 0.20 +0.2 4,217,810 + ABIE41_RS20515 0.20 +0.7 4,217,810 + ABIE41_RS20515 0.20 -1.0 4,217,810 + ABIE41_RS20515 0.20 -0.7 4,217,810 + ABIE41_RS20515 0.20 +0.7 4,217,811 - ABIE41_RS20515 0.20 -2.0 4,217,813 + ABIE41_RS20515 0.21 +0.1 4,217,814 - ABIE41_RS20515 0.21 +0.3 4,217,814 - ABIE41_RS20515 0.21 +1.6 4,217,814 - ABIE41_RS20515 0.21 +1.0 4,217,847 + ABIE41_RS20515 0.25 -1.3 4,217,848 - ABIE41_RS20515 0.25 -0.3 4,217,918 + ABIE41_RS20515 0.33 +3.1 4,217,919 - ABIE41_RS20515 0.33 -1.2 4,217,919 - ABIE41_RS20515 0.33 -1.2 4,218,002 + ABIE41_RS20515 0.43 -0.7 4,218,002 + ABIE41_RS20515 0.43 -2.1 4,218,029 + ABIE41_RS20515 0.46 +0.1 4,218,029 + ABIE41_RS20515 0.46 +1.1 4,218,030 - ABIE41_RS20515 0.47 -0.1 4,218,030 - ABIE41_RS20515 0.47 +0.9 4,218,190 + ABIE41_RS20515 0.66 -0.0 4,218,326 + ABIE41_RS20515 0.82 -3.2 4,218,327 - ABIE41_RS20515 0.82 -2.5 4,218,327 - ABIE41_RS20515 0.82 -0.4 4,218,330 - ABIE41_RS20515 0.82 -0.1 4,218,330 - ABIE41_RS20515 0.82 +0.8 4,218,389 + ABIE41_RS20515 0.90 -1.9 4,218,389 + ABIE41_RS20515 0.90 +0.6 4,218,389 + ABIE41_RS20515 0.90 -0.4 4,218,390 - ABIE41_RS20515 0.90 +1.6 4,218,390 - ABIE41_RS20515 0.90 -1.6 4,218,390 - ABIE41_RS20515 0.90 -0.2 4,218,390 - ABIE41_RS20515 0.90 -0.7 4,218,390 - ABIE41_RS20515 0.90 +0.7 4,218,550 + -0.2 4,218,550 + -0.3 4,218,965 + ABIE41_RS20520 0.32 +1.6 4,218,965 + ABIE41_RS20520 0.32 +0.5 4,218,965 + ABIE41_RS20520 0.32 +1.4 4,218,965 + ABIE41_RS20520 0.32 -0.7 4,218,966 - ABIE41_RS20520 0.33 +0.0 4,218,966 - ABIE41_RS20520 0.33 +0.4 4,218,966 - ABIE41_RS20520 0.33 +0.1 4,218,966 - ABIE41_RS20520 0.33 +0.3 4,218,966 - ABIE41_RS20520 0.33 -2.1 4,218,966 - ABIE41_RS20520 0.33 -0.2 4,218,966 - ABIE41_RS20520 0.33 -1.7 4,219,028 + ABIE41_RS20520 0.38 -1.3 4,219,029 - ABIE41_RS20520 0.38 -0.1 4,219,029 - ABIE41_RS20520 0.38 +0.2 4,219,029 - ABIE41_RS20520 0.38 +0.3 4,219,055 + ABIE41_RS20520 0.40 -1.6 4,219,055 + ABIE41_RS20520 0.40 -3.0 4,219,139 + ABIE41_RS20520 0.47 -1.3 4,219,140 - ABIE41_RS20520 0.47 -2.0 4,219,193 + ABIE41_RS20520 0.52 -1.2 4,219,193 + ABIE41_RS20520 0.52 +0.4 4,219,193 + ABIE41_RS20520 0.52 -0.4 4,219,194 - ABIE41_RS20520 0.52 +0.4 4,219,194 - ABIE41_RS20520 0.52 -0.1 4,219,283 + ABIE41_RS20520 0.59 -0.4 4,219,283 + ABIE41_RS20520 0.59 +0.6 4,219,283 + ABIE41_RS20520 0.59 -0.1 4,219,284 - ABIE41_RS20520 0.59 +1.6 4,219,284 - ABIE41_RS20520 0.59 -0.3
Or see this region's nucleotide sequence