Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS19830 and ABIE41_RS19835 are separated by 56 nucleotides ABIE41_RS19835 and ABIE41_RS19840 are separated by 55 nucleotides ABIE41_RS19840 and ABIE41_RS19845 are separated by 76 nucleotides
ABIE41_RS19830: ABIE41_RS19830 - branched-chain amino acid ABC transporter permease, at 4,069,288 to 4,070,622
_RS19830
ABIE41_RS19835: ABIE41_RS19835 - threonine ammonia-lyase, at 4,070,679 to 4,071,938
_RS19835
ABIE41_RS19840: ABIE41_RS19840 - RDD family protein, at 4,071,994 to 4,072,467
_RS19840
ABIE41_RS19845: ABIE41_RS19845 - arginyltransferase, at 4,072,544 to 4,073,290
_RS19845
Position (kb) 4070
4071
4072 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4069.708 kb on + strand, within ABIE41_RS19830 at 4069.709 kb on - strand, within ABIE41_RS19830 at 4069.709 kb on - strand, within ABIE41_RS19830 at 4069.753 kb on + strand, within ABIE41_RS19830 at 4069.753 kb on + strand, within ABIE41_RS19830 at 4069.754 kb on - strand, within ABIE41_RS19830 at 4069.754 kb on - strand, within ABIE41_RS19830 at 4069.754 kb on - strand, within ABIE41_RS19830 at 4069.774 kb on + strand, within ABIE41_RS19830 at 4069.774 kb on + strand, within ABIE41_RS19830 at 4069.774 kb on + strand, within ABIE41_RS19830 at 4069.775 kb on - strand, within ABIE41_RS19830 at 4069.775 kb on - strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.786 kb on + strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4069.787 kb on - strand, within ABIE41_RS19830 at 4070.050 kb on + strand, within ABIE41_RS19830 at 4070.227 kb on + strand, within ABIE41_RS19830 at 4070.353 kb on - strand, within ABIE41_RS19830 at 4070.542 kb on + strand at 4070.543 kb on - strand at 4070.543 kb on - strand at 4070.711 kb on + strand at 4070.711 kb on + strand at 4070.711 kb on + strand at 4070.946 kb on + strand, within ABIE41_RS19835 at 4070.946 kb on + strand, within ABIE41_RS19835 at 4070.946 kb on + strand, within ABIE41_RS19835 at 4071.066 kb on + strand, within ABIE41_RS19835 at 4071.130 kb on - strand, within ABIE41_RS19835 at 4071.310 kb on - strand, within ABIE41_RS19835 at 4071.310 kb on - strand, within ABIE41_RS19835 at 4071.477 kb on + strand, within ABIE41_RS19835 at 4071.478 kb on - strand, within ABIE41_RS19835 at 4071.483 kb on + strand, within ABIE41_RS19835 at 4072.009 kb on + strand at 4072.351 kb on + strand, within ABIE41_RS19840 at 4072.466 kb on - strand at 4072.505 kb on + strand at 4072.604 kb on + strand at 4072.604 kb on + strand at 4072.868 kb on + strand, within ABIE41_RS19845 at 4072.868 kb on + strand, within ABIE41_RS19845 at 4072.868 kb on + strand, within ABIE41_RS19845 at 4072.868 kb on + strand, within ABIE41_RS19845 at 4072.868 kb on + strand, within ABIE41_RS19845 at 4072.869 kb on - strand, within ABIE41_RS19845 at 4072.869 kb on - strand, within ABIE41_RS19845 at 4072.886 kb on + strand, within ABIE41_RS19845 at 4072.887 kb on - strand, within ABIE41_RS19845
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,069,708 + ABIE41_RS19830 0.31 -0.4 4,069,709 - ABIE41_RS19830 0.32 -2.2 4,069,709 - ABIE41_RS19830 0.32 -0.2 4,069,753 + ABIE41_RS19830 0.35 -0.9 4,069,753 + ABIE41_RS19830 0.35 +0.1 4,069,754 - ABIE41_RS19830 0.35 +1.4 4,069,754 - ABIE41_RS19830 0.35 +0.4 4,069,754 - ABIE41_RS19830 0.35 -0.8 4,069,774 + ABIE41_RS19830 0.36 +0.6 4,069,774 + ABIE41_RS19830 0.36 -3.5 4,069,774 + ABIE41_RS19830 0.36 -0.0 4,069,775 - ABIE41_RS19830 0.36 +1.5 4,069,775 - ABIE41_RS19830 0.36 -0.2 4,069,786 + ABIE41_RS19830 0.37 -0.8 4,069,786 + ABIE41_RS19830 0.37 +1.6 4,069,786 + ABIE41_RS19830 0.37 +1.8 4,069,786 + ABIE41_RS19830 0.37 +0.7 4,069,786 + ABIE41_RS19830 0.37 +0.4 4,069,786 + ABIE41_RS19830 0.37 -0.5 4,069,786 + ABIE41_RS19830 0.37 +0.6 4,069,787 - ABIE41_RS19830 0.37 -2.5 4,069,787 - ABIE41_RS19830 0.37 +0.3 4,069,787 - ABIE41_RS19830 0.37 +0.4 4,069,787 - ABIE41_RS19830 0.37 -0.2 4,069,787 - ABIE41_RS19830 0.37 -0.5 4,069,787 - ABIE41_RS19830 0.37 +0.2 4,069,787 - ABIE41_RS19830 0.37 -2.2 4,070,050 + ABIE41_RS19830 0.57 -1.4 4,070,227 + ABIE41_RS19830 0.70 +0.9 4,070,353 - ABIE41_RS19830 0.80 -0.4 4,070,542 + +0.7 4,070,543 - +0.2 4,070,543 - -1.2 4,070,711 + +0.2 4,070,711 + +0.1 4,070,711 + -0.3 4,070,946 + ABIE41_RS19835 0.21 +2.0 4,070,946 + ABIE41_RS19835 0.21 +0.0 4,070,946 + ABIE41_RS19835 0.21 +1.7 4,071,066 + ABIE41_RS19835 0.31 -0.6 4,071,130 - ABIE41_RS19835 0.36 +0.6 4,071,310 - ABIE41_RS19835 0.50 +0.9 4,071,310 - ABIE41_RS19835 0.50 +0.3 4,071,477 + ABIE41_RS19835 0.63 -0.3 4,071,478 - ABIE41_RS19835 0.63 +0.3 4,071,483 + ABIE41_RS19835 0.64 -0.5 4,072,009 + +1.4 4,072,351 + ABIE41_RS19840 0.75 -1.7 4,072,466 - -3.0 4,072,505 + +0.5 4,072,604 + +0.6 4,072,604 + +0.5 4,072,868 + ABIE41_RS19845 0.43 +1.6 4,072,868 + ABIE41_RS19845 0.43 +0.8 4,072,868 + ABIE41_RS19845 0.43 +1.9 4,072,868 + ABIE41_RS19845 0.43 +1.4 4,072,868 + ABIE41_RS19845 0.43 +1.0 4,072,869 - ABIE41_RS19845 0.44 -2.1 4,072,869 - ABIE41_RS19845 0.44 +1.2 4,072,886 + ABIE41_RS19845 0.46 +2.6 4,072,887 - ABIE41_RS19845 0.46 +2.8
Or see this region's nucleotide sequence