Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08810

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08805 and ABIE41_RS08810 are separated by 208 nucleotidesABIE41_RS08810 and ABIE41_RS08815 are separated by 87 nucleotidesABIE41_RS08815 and ABIE41_RS08820 are separated by 31 nucleotides ABIE41_RS08805: ABIE41_RS08805 - hypothetical protein, at 1,824,109 to 1,824,342 _RS08805 ABIE41_RS08810: ABIE41_RS08810 - hypothetical protein, at 1,824,551 to 1,824,814 _RS08810 ABIE41_RS08815: ABIE41_RS08815 - RbsD/FucU domain-containing protein, at 1,824,902 to 1,825,357 _RS08815 ABIE41_RS08820: ABIE41_RS08820 - amidohydrolase family protein, at 1,825,389 to 1,826,237 _RS08820 Position (kb) 1824 1825Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1823.665 kb on - strandat 1824.498 kb on - strandat 1824.514 kb on + strandat 1824.515 kb on - strandat 1824.951 kb on + strand, within ABIE41_RS08815at 1824.952 kb on - strand, within ABIE41_RS08815at 1824.952 kb on - strand, within ABIE41_RS08815at 1825.005 kb on + strand, within ABIE41_RS08815at 1825.005 kb on + strand, within ABIE41_RS08815at 1825.005 kb on + strand, within ABIE41_RS08815at 1825.005 kb on + strand, within ABIE41_RS08815at 1825.006 kb on - strand, within ABIE41_RS08815at 1825.006 kb on - strand, within ABIE41_RS08815at 1825.006 kb on - strand, within ABIE41_RS08815at 1825.414 kb on + strandat 1825.415 kb on - strandat 1825.415 kb on - strandat 1825.415 kb on - strandat 1825.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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1,823,665 - +0.5
1,824,498 - +0.7
1,824,514 + +0.2
1,824,515 - -4.1
1,824,951 + ABIE41_RS08815 0.11 +0.6
1,824,952 - ABIE41_RS08815 0.11 +1.5
1,824,952 - ABIE41_RS08815 0.11 -0.3
1,825,005 + ABIE41_RS08815 0.23 +0.4
1,825,005 + ABIE41_RS08815 0.23 -1.6
1,825,005 + ABIE41_RS08815 0.23 +0.5
1,825,005 + ABIE41_RS08815 0.23 +1.6
1,825,006 - ABIE41_RS08815 0.23 -0.8
1,825,006 - ABIE41_RS08815 0.23 -0.6
1,825,006 - ABIE41_RS08815 0.23 +1.3
1,825,414 + -1.5
1,825,415 - -0.7
1,825,415 - -0.1
1,825,415 - -0.7
1,825,415 - -1.2

Or see this region's nucleotide sequence