Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08615 and ABIE41_RS08620 are separated by 24 nucleotides ABIE41_RS08620 and ABIE41_RS08625 are separated by 20 nucleotides ABIE41_RS08625 and ABIE41_RS08630 are separated by 72 nucleotides ABIE41_RS08630 and ABIE41_RS08635 overlap by 4 nucleotides
ABIE41_RS08615: ABIE41_RS08615 - BolA family transcriptional regulator, at 1,782,379 to 1,782,615
_RS08615
ABIE41_RS08620: ABIE41_RS08620 - DUF29 domain-containing protein, at 1,782,640 to 1,783,140
_RS08620
ABIE41_RS08625: ABIE41_RS08625 - Grx4 family monothiol glutaredoxin, at 1,783,161 to 1,783,496
_RS08625
ABIE41_RS08630: ABIE41_RS08630 - class A beta-lactamase, at 1,783,569 to 1,784,582
_RS08630
ABIE41_RS08635: ABIE41_RS08635 - DMT family transporter, at 1,784,579 to 1,785,493
_RS08635
Position (kb)
1783
1784
1785 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1782.614 kb on - strand at 1782.850 kb on + strand, within ABIE41_RS08620 at 1782.851 kb on - strand, within ABIE41_RS08620 at 1782.928 kb on + strand, within ABIE41_RS08620 at 1782.928 kb on + strand, within ABIE41_RS08620 at 1782.929 kb on - strand, within ABIE41_RS08620 at 1783.012 kb on + strand, within ABIE41_RS08620 at 1783.013 kb on - strand, within ABIE41_RS08620 at 1783.013 kb on - strand, within ABIE41_RS08620 at 1783.013 kb on - strand, within ABIE41_RS08620 at 1783.013 kb on - strand, within ABIE41_RS08620 at 1783.148 kb on + strand at 1783.148 kb on + strand at 1783.148 kb on + strand at 1783.148 kb on + strand at 1783.148 kb on + strand at 1783.354 kb on - strand, within ABIE41_RS08625 at 1783.583 kb on + strand at 1783.584 kb on - strand at 1783.890 kb on + strand, within ABIE41_RS08630 at 1784.079 kb on + strand, within ABIE41_RS08630 at 1784.080 kb on - strand, within ABIE41_RS08630 at 1784.080 kb on - strand, within ABIE41_RS08630 at 1784.155 kb on - strand, within ABIE41_RS08630 at 1784.419 kb on + strand, within ABIE41_RS08630 at 1784.419 kb on + strand, within ABIE41_RS08630 at 1784.419 kb on + strand, within ABIE41_RS08630 at 1784.419 kb on + strand, within ABIE41_RS08630 at 1784.420 kb on - strand, within ABIE41_RS08630 at 1784.420 kb on - strand, within ABIE41_RS08630 at 1784.497 kb on - strand at 1784.581 kb on - strand at 1784.611 kb on - strand at 1784.649 kb on + strand at 1784.649 kb on + strand at 1784.802 kb on + strand, within ABIE41_RS08635 at 1784.802 kb on + strand, within ABIE41_RS08635 at 1784.803 kb on - strand, within ABIE41_RS08635 at 1784.803 kb on - strand, within ABIE41_RS08635 at 1784.803 kb on - strand, within ABIE41_RS08635 at 1784.803 kb on - strand, within ABIE41_RS08635 at 1784.803 kb on - strand, within ABIE41_RS08635 at 1784.970 kb on + strand, within ABIE41_RS08635 at 1784.970 kb on + strand, within ABIE41_RS08635 at 1784.970 kb on + strand, within ABIE41_RS08635 at 1784.970 kb on + strand, within ABIE41_RS08635 at 1784.970 kb on + strand, within ABIE41_RS08635 at 1784.970 kb on + strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1784.971 kb on - strand, within ABIE41_RS08635 at 1785.210 kb on + strand, within ABIE41_RS08635 at 1785.210 kb on + strand, within ABIE41_RS08635 at 1785.210 kb on + strand, within ABIE41_RS08635 at 1785.210 kb on + strand, within ABIE41_RS08635 at 1785.210 kb on + strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.211 kb on - strand, within ABIE41_RS08635 at 1785.447 kb on + strand at 1785.447 kb on + strand at 1785.447 kb on + strand at 1785.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 1,782,614 - -2.1 1,782,850 + ABIE41_RS08620 0.42 +0.1 1,782,851 - ABIE41_RS08620 0.42 +0.7 1,782,928 + ABIE41_RS08620 0.57 +0.9 1,782,928 + ABIE41_RS08620 0.57 -1.2 1,782,929 - ABIE41_RS08620 0.58 -1.9 1,783,012 + ABIE41_RS08620 0.74 -2.9 1,783,013 - ABIE41_RS08620 0.74 -0.8 1,783,013 - ABIE41_RS08620 0.74 +0.0 1,783,013 - ABIE41_RS08620 0.74 -0.2 1,783,013 - ABIE41_RS08620 0.74 +0.7 1,783,148 + -0.3 1,783,148 + +0.5 1,783,148 + -1.1 1,783,148 + -1.1 1,783,148 + -0.3 1,783,354 - ABIE41_RS08625 0.57 -0.8 1,783,583 + +0.5 1,783,584 - -0.1 1,783,890 + ABIE41_RS08630 0.32 +0.0 1,784,079 + ABIE41_RS08630 0.50 -0.2 1,784,080 - ABIE41_RS08630 0.50 +0.3 1,784,080 - ABIE41_RS08630 0.50 +1.3 1,784,155 - ABIE41_RS08630 0.58 +0.2 1,784,419 + ABIE41_RS08630 0.84 -0.8 1,784,419 + ABIE41_RS08630 0.84 -1.1 1,784,419 + ABIE41_RS08630 0.84 -0.1 1,784,419 + ABIE41_RS08630 0.84 +0.0 1,784,420 - ABIE41_RS08630 0.84 +0.5 1,784,420 - ABIE41_RS08630 0.84 -0.5 1,784,497 - +0.3 1,784,581 - +1.4 1,784,611 - -0.5 1,784,649 + -2.9 1,784,649 + -0.7 1,784,802 + ABIE41_RS08635 0.24 -0.6 1,784,802 + ABIE41_RS08635 0.24 +0.0 1,784,803 - ABIE41_RS08635 0.24 +0.5 1,784,803 - ABIE41_RS08635 0.24 +0.5 1,784,803 - ABIE41_RS08635 0.24 -2.0 1,784,803 - ABIE41_RS08635 0.24 -0.8 1,784,803 - ABIE41_RS08635 0.24 -1.2 1,784,970 + ABIE41_RS08635 0.43 -3.6 1,784,970 + ABIE41_RS08635 0.43 -0.3 1,784,970 + ABIE41_RS08635 0.43 +0.1 1,784,970 + ABIE41_RS08635 0.43 -0.8 1,784,970 + ABIE41_RS08635 0.43 -0.1 1,784,970 + ABIE41_RS08635 0.43 -0.5 1,784,971 - ABIE41_RS08635 0.43 -2.5 1,784,971 - ABIE41_RS08635 0.43 -3.8 1,784,971 - ABIE41_RS08635 0.43 -2.3 1,784,971 - ABIE41_RS08635 0.43 -1.6 1,784,971 - ABIE41_RS08635 0.43 +0.0 1,784,971 - ABIE41_RS08635 0.43 -3.0 1,784,971 - ABIE41_RS08635 0.43 +0.5 1,785,210 + ABIE41_RS08635 0.69 -0.6 1,785,210 + ABIE41_RS08635 0.69 +0.6 1,785,210 + ABIE41_RS08635 0.69 -0.2 1,785,210 + ABIE41_RS08635 0.69 -0.5 1,785,210 + ABIE41_RS08635 0.69 -1.1 1,785,211 - ABIE41_RS08635 0.69 -1.8 1,785,211 - ABIE41_RS08635 0.69 -2.1 1,785,211 - ABIE41_RS08635 0.69 +0.8 1,785,211 - ABIE41_RS08635 0.69 -1.8 1,785,211 - ABIE41_RS08635 0.69 -0.4 1,785,211 - ABIE41_RS08635 0.69 +0.9 1,785,211 - ABIE41_RS08635 0.69 -0.5 1,785,211 - ABIE41_RS08635 0.69 +1.5 1,785,447 + -2.3 1,785,447 + -2.7 1,785,447 + -0.7 1,785,448 - -1.5
Or see this region's nucleotide sequence