Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07710

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS07700 and ABIE41_RS07705 are separated by 21 nucleotidesABIE41_RS07705 and ABIE41_RS07710 overlap by 4 nucleotidesABIE41_RS07710 and ABIE41_RS07715 are separated by 110 nucleotides ABIE41_RS07700: ABIE41_RS07700 - alpha/beta fold hydrolase, at 1,573,387 to 1,574,466 _RS07700 ABIE41_RS07705: ABIE41_RS07705 - phosphonate ABC transporter, permease protein PhnE, at 1,574,488 to 1,575,342 _RS07705 ABIE41_RS07710: ABIE41_RS07710 - phosphonate ABC transporter, permease protein PhnE, at 1,575,339 to 1,576,220 _RS07710 ABIE41_RS07715: ABIE41_RS07715 - phosphonate ABC transporter substrate-binding protein, at 1,576,331 to 1,577,248 _RS07715 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1574.625 kb on - strand, within ABIE41_RS07705at 1574.625 kb on - strand, within ABIE41_RS07705at 1574.625 kb on - strand, within ABIE41_RS07705at 1574.625 kb on - strand, within ABIE41_RS07705at 1574.690 kb on + strand, within ABIE41_RS07705at 1574.690 kb on + strand, within ABIE41_RS07705at 1574.690 kb on + strand, within ABIE41_RS07705at 1574.690 kb on + strand, within ABIE41_RS07705at 1574.690 kb on + strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.691 kb on - strand, within ABIE41_RS07705at 1574.693 kb on + strand, within ABIE41_RS07705at 1574.693 kb on + strand, within ABIE41_RS07705at 1574.694 kb on - strand, within ABIE41_RS07705at 1574.694 kb on - strand, within ABIE41_RS07705at 1574.694 kb on - strand, within ABIE41_RS07705at 1574.825 kb on + strand, within ABIE41_RS07705at 1574.825 kb on + strand, within ABIE41_RS07705at 1574.825 kb on + strand, within ABIE41_RS07705at 1574.826 kb on - strand, within ABIE41_RS07705at 1574.848 kb on - strand, within ABIE41_RS07705at 1575.010 kb on - strand, within ABIE41_RS07705at 1575.010 kb on - strand, within ABIE41_RS07705at 1575.160 kb on - strand, within ABIE41_RS07705at 1575.160 kb on - strand, within ABIE41_RS07705at 1575.212 kb on + strand, within ABIE41_RS07705at 1575.212 kb on + strand, within ABIE41_RS07705at 1575.451 kb on + strand, within ABIE41_RS07710at 1575.557 kb on - strand, within ABIE41_RS07710at 1575.557 kb on - strand, within ABIE41_RS07710at 1575.557 kb on - strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.910 kb on + strand, within ABIE41_RS07710at 1575.910 kb on + strand, within ABIE41_RS07710at 1575.910 kb on + strand, within ABIE41_RS07710at 1575.911 kb on - strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.028 kb on - strand, within ABIE41_RS07710at 1576.165 kb on + strandat 1576.165 kb on + strandat 1576.392 kb on + strandat 1576.392 kb on + strandat 1576.392 kb on + strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.436 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.530 kb on + strand, within ABIE41_RS07715at 1576.567 kb on - strand, within ABIE41_RS07715at 1576.567 kb on - strand, within ABIE41_RS07715at 1576.567 kb on - strand, within ABIE41_RS07715at 1576.731 kb on + strand, within ABIE41_RS07715at 1576.731 kb on + strand, within ABIE41_RS07715at 1576.732 kb on - strand, within ABIE41_RS07715at 1576.732 kb on - strand, within ABIE41_RS07715at 1576.733 kb on - strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.873 kb on - strand, within ABIE41_RS07715at 1576.881 kb on + strand, within ABIE41_RS07715at 1576.884 kb on + strand, within ABIE41_RS07715at 1576.885 kb on - strand, within ABIE41_RS07715at 1576.885 kb on - strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1577.026 kb on - strand, within ABIE41_RS07715at 1577.076 kb on + strand, within ABIE41_RS07715at 1577.076 kb on + strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.094 kb on + strand, within ABIE41_RS07715at 1577.094 kb on + strand, within ABIE41_RS07715at 1577.094 kb on + strand, within ABIE41_RS07715at 1577.155 kb on - strand, within ABIE41_RS07715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
1,574,625 - ABIE41_RS07705 0.16 +0.2
1,574,625 - ABIE41_RS07705 0.16 +2.0
1,574,625 - ABIE41_RS07705 0.16 +0.4
1,574,625 - ABIE41_RS07705 0.16 +0.4
1,574,690 + ABIE41_RS07705 0.24 -0.1
1,574,690 + ABIE41_RS07705 0.24 +0.5
1,574,690 + ABIE41_RS07705 0.24 -2.1
1,574,690 + ABIE41_RS07705 0.24 -0.7
1,574,690 + ABIE41_RS07705 0.24 -0.4
1,574,691 - ABIE41_RS07705 0.24 +1.2
1,574,691 - ABIE41_RS07705 0.24 -1.9
1,574,691 - ABIE41_RS07705 0.24 -3.0
1,574,691 - ABIE41_RS07705 0.24 +1.7
1,574,691 - ABIE41_RS07705 0.24 +0.4
1,574,691 - ABIE41_RS07705 0.24 +0.2
1,574,691 - ABIE41_RS07705 0.24 -2.5
1,574,693 + ABIE41_RS07705 0.24 +0.5
1,574,693 + ABIE41_RS07705 0.24 +0.3
1,574,694 - ABIE41_RS07705 0.24 +0.4
1,574,694 - ABIE41_RS07705 0.24 +0.3
1,574,694 - ABIE41_RS07705 0.24 -1.5
1,574,825 + ABIE41_RS07705 0.39 -1.5
1,574,825 + ABIE41_RS07705 0.39 -0.2
1,574,825 + ABIE41_RS07705 0.39 +0.3
1,574,826 - ABIE41_RS07705 0.40 -0.6
1,574,848 - ABIE41_RS07705 0.42 -2.3
1,575,010 - ABIE41_RS07705 0.61 +1.8
1,575,010 - ABIE41_RS07705 0.61 -3.2
1,575,160 - ABIE41_RS07705 0.79 +0.0
1,575,160 - ABIE41_RS07705 0.79 +0.7
1,575,212 + ABIE41_RS07705 0.85 -1.3
1,575,212 + ABIE41_RS07705 0.85 -1.8
1,575,451 + ABIE41_RS07710 0.13 -1.3
1,575,557 - ABIE41_RS07710 0.25 -0.9
1,575,557 - ABIE41_RS07710 0.25 -0.9
1,575,557 - ABIE41_RS07710 0.25 +0.4
1,575,873 + ABIE41_RS07710 0.61 +1.3
1,575,873 + ABIE41_RS07710 0.61 +0.5
1,575,873 + ABIE41_RS07710 0.61 +0.4
1,575,873 + ABIE41_RS07710 0.61 -0.6
1,575,910 + ABIE41_RS07710 0.65 -1.5
1,575,910 + ABIE41_RS07710 0.65 +0.4
1,575,910 + ABIE41_RS07710 0.65 +0.0
1,575,911 - ABIE41_RS07710 0.65 +0.5
1,576,027 + ABIE41_RS07710 0.78 -1.1
1,576,027 + ABIE41_RS07710 0.78 -0.2
1,576,027 + ABIE41_RS07710 0.78 -0.7
1,576,027 + ABIE41_RS07710 0.78 +1.5
1,576,027 + ABIE41_RS07710 0.78 +0.4
1,576,027 + ABIE41_RS07710 0.78 -0.4
1,576,028 - ABIE41_RS07710 0.78 -1.5
1,576,165 + -0.1
1,576,165 + -3.5
1,576,392 + +0.6
1,576,392 + -3.6
1,576,392 + +0.4
1,576,393 - +0.5
1,576,393 - -0.4
1,576,393 - -2.9
1,576,393 - +0.8
1,576,393 - -0.3
1,576,436 + ABIE41_RS07715 0.11 -0.5
1,576,437 + ABIE41_RS07715 0.12 +0.2
1,576,437 + ABIE41_RS07715 0.12 -3.0
1,576,437 + ABIE41_RS07715 0.12 +0.3
1,576,437 + ABIE41_RS07715 0.12 -0.8
1,576,437 + ABIE41_RS07715 0.12 -3.3
1,576,437 + ABIE41_RS07715 0.12 -1.9
1,576,437 + ABIE41_RS07715 0.12 -0.9
1,576,438 - ABIE41_RS07715 0.12 +0.7
1,576,438 - ABIE41_RS07715 0.12 -1.2
1,576,438 - ABIE41_RS07715 0.12 -0.0
1,576,438 - ABIE41_RS07715 0.12 -0.4
1,576,530 + ABIE41_RS07715 0.22 -0.5
1,576,567 - ABIE41_RS07715 0.26 -1.5
1,576,567 - ABIE41_RS07715 0.26 -2.1
1,576,567 - ABIE41_RS07715 0.26 -1.7
1,576,731 + ABIE41_RS07715 0.44 -1.1
1,576,731 + ABIE41_RS07715 0.44 +0.4
1,576,732 - ABIE41_RS07715 0.44 -0.1
1,576,732 - ABIE41_RS07715 0.44 +0.4
1,576,733 - ABIE41_RS07715 0.44 -0.8
1,576,869 + ABIE41_RS07715 0.59 +0.4
1,576,869 + ABIE41_RS07715 0.59 +0.9
1,576,869 + ABIE41_RS07715 0.59 +0.4
1,576,869 + ABIE41_RS07715 0.59 +0.2
1,576,869 + ABIE41_RS07715 0.59 +0.7
1,576,869 + ABIE41_RS07715 0.59 -2.1
1,576,869 + ABIE41_RS07715 0.59 -0.2
1,576,869 + ABIE41_RS07715 0.59 +0.5
1,576,869 + ABIE41_RS07715 0.59 -0.6
1,576,870 - ABIE41_RS07715 0.59 -3.1
1,576,870 - ABIE41_RS07715 0.59 -0.4
1,576,870 - ABIE41_RS07715 0.59 -1.9
1,576,870 - ABIE41_RS07715 0.59 -0.0
1,576,873 - ABIE41_RS07715 0.59 +0.7
1,576,881 + ABIE41_RS07715 0.60 -0.2
1,576,884 + ABIE41_RS07715 0.60 -2.4
1,576,885 - ABIE41_RS07715 0.60 -0.5
1,576,885 - ABIE41_RS07715 0.60 -0.4
1,576,974 + ABIE41_RS07715 0.70 -0.4
1,576,974 + ABIE41_RS07715 0.70 -2.2
1,576,974 + ABIE41_RS07715 0.70 +1.8
1,576,974 + ABIE41_RS07715 0.70 +0.0
1,576,974 + ABIE41_RS07715 0.70 -1.9
1,576,974 + ABIE41_RS07715 0.70 -0.3
1,576,974 + ABIE41_RS07715 0.70 +1.5
1,576,974 + ABIE41_RS07715 0.70 +2.8
1,576,974 + ABIE41_RS07715 0.70 +0.6
1,576,974 + ABIE41_RS07715 0.70 -0.8
1,576,974 + ABIE41_RS07715 0.70 -1.1
1,576,974 + ABIE41_RS07715 0.70 +0.9
1,576,974 + ABIE41_RS07715 0.70 +0.3
1,576,975 - ABIE41_RS07715 0.70 +0.0
1,576,975 - ABIE41_RS07715 0.70 -2.6
1,576,975 - ABIE41_RS07715 0.70 +2.7
1,576,975 - ABIE41_RS07715 0.70 +0.0
1,576,975 - ABIE41_RS07715 0.70 -1.5
1,577,026 - ABIE41_RS07715 0.76 +0.1
1,577,076 + ABIE41_RS07715 0.81 -1.1
1,577,076 + ABIE41_RS07715 0.81 +0.5
1,577,077 - ABIE41_RS07715 0.81 +2.1
1,577,077 - ABIE41_RS07715 0.81 +0.8
1,577,077 - ABIE41_RS07715 0.81 +0.1
1,577,077 - ABIE41_RS07715 0.81 -2.7
1,577,094 + ABIE41_RS07715 0.83 -0.3
1,577,094 + ABIE41_RS07715 0.83 +0.5
1,577,094 + ABIE41_RS07715 0.83 -0.2
1,577,155 - ABIE41_RS07715 0.90 +0.4

Or see this region's nucleotide sequence