Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01930 and ABIE41_RS01935 are separated by 85 nucleotides ABIE41_RS01935 and ABIE41_RS01940 are separated by 3 nucleotides ABIE41_RS01940 and ABIE41_RS01945 are separated by 78 nucleotides ABIE41_RS01945 and ABIE41_RS01950 are separated by 67 nucleotides
ABIE41_RS01930: ABIE41_RS01930 - 8-oxoguanine deaminase, at 389,341 to 390,675
_RS01930
ABIE41_RS01935: ABIE41_RS01935 - hypothetical protein, at 390,761 to 391,012
_RS01935
ABIE41_RS01940: ABIE41_RS01940 - MarR family winged helix-turn-helix transcriptional regulator, at 391,016 to 391,531
_RS01940
ABIE41_RS01945: ABIE41_RS01945 - precorrin-6A synthase (deacetylating), at 391,610 to 392,359
_RS01945
ABIE41_RS01950: ABIE41_RS01950 - VOC family protein, at 392,427 to 393,209
_RS01950
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.667 kb on + strand at 390.845 kb on - strand, within ABIE41_RS01935 at 390.971 kb on + strand, within ABIE41_RS01935 at 390.971 kb on + strand, within ABIE41_RS01935 at 390.981 kb on - strand, within ABIE41_RS01935 at 390.981 kb on - strand, within ABIE41_RS01935 at 390.998 kb on + strand at 390.999 kb on - strand at 390.999 kb on - strand at 390.999 kb on - strand at 390.999 kb on - strand at 390.999 kb on - strand at 391.183 kb on - strand, within ABIE41_RS01940 at 391.183 kb on - strand, within ABIE41_RS01940 at 391.401 kb on + strand, within ABIE41_RS01940 at 391.402 kb on - strand, within ABIE41_RS01940 at 391.402 kb on - strand, within ABIE41_RS01940 at 391.402 kb on - strand, within ABIE41_RS01940 at 391.453 kb on - strand, within ABIE41_RS01940 at 391.590 kb on + strand at 391.590 kb on + strand at 391.590 kb on + strand at 391.590 kb on + strand at 391.591 kb on - strand at 391.591 kb on - strand at 391.611 kb on + strand at 391.611 kb on + strand at 391.611 kb on + strand at 391.612 kb on - strand at 391.612 kb on - strand at 392.391 kb on + strand at 392.391 kb on + strand at 392.391 kb on + strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.392 kb on - strand at 392.942 kb on + strand, within ABIE41_RS01950 at 392.943 kb on - strand, within ABIE41_RS01950 at 393.058 kb on + strand, within ABIE41_RS01950 at 393.143 kb on + strand at 393.143 kb on + strand at 393.143 kb on + strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.144 kb on - strand at 393.145 kb on + strand at 393.145 kb on + strand at 393.146 kb on - strand at 393.146 kb on - strand at 393.188 kb on + strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.189 kb on - strand at 393.189 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 390,667 + +0.7 390,845 - ABIE41_RS01935 0.33 -0.7 390,971 + ABIE41_RS01935 0.83 -1.5 390,971 + ABIE41_RS01935 0.83 -0.1 390,981 - ABIE41_RS01935 0.87 +0.0 390,981 - ABIE41_RS01935 0.87 -1.5 390,998 + +0.6 390,999 - -2.1 390,999 - -1.1 390,999 - +1.3 390,999 - -0.3 390,999 - -0.8 391,183 - ABIE41_RS01940 0.32 -1.1 391,183 - ABIE41_RS01940 0.32 -0.7 391,401 + ABIE41_RS01940 0.75 -0.6 391,402 - ABIE41_RS01940 0.75 -0.8 391,402 - ABIE41_RS01940 0.75 -2.9 391,402 - ABIE41_RS01940 0.75 -0.9 391,453 - ABIE41_RS01940 0.85 -1.1 391,590 + -1.9 391,590 + +0.1 391,590 + -0.2 391,590 + +0.5 391,591 - -1.4 391,591 - +0.2 391,611 + -0.2 391,611 + -0.2 391,611 + -1.1 391,612 - +1.3 391,612 - +0.1 392,391 + -1.8 392,391 + +0.8 392,391 + +1.7 392,392 - -1.9 392,392 - +0.2 392,392 - -0.1 392,392 - +0.5 392,392 - +0.5 392,392 - +0.5 392,942 + ABIE41_RS01950 0.66 +0.0 392,943 - ABIE41_RS01950 0.66 +0.6 393,058 + ABIE41_RS01950 0.81 +0.8 393,143 + -0.3 393,143 + +1.4 393,143 + +0.2 393,144 - -0.7 393,144 - -0.6 393,144 - -1.8 393,144 - -0.3 393,144 - -0.4 393,144 - +1.0 393,145 + -2.1 393,145 + +0.0 393,146 - +0.8 393,146 - -1.1 393,188 + -0.6 393,189 - -0.4 393,189 - +1.0 393,189 - -3.3 393,189 - -3.2
Or see this region's nucleotide sequence