Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01550 and ABIE41_RS01555 overlap by 4 nucleotides ABIE41_RS01555 and ABIE41_RS01560 overlap by 20 nucleotides ABIE41_RS01560 and ABIE41_RS01565 are separated by 5 nucleotides ABIE41_RS01565 and ABIE41_RS01570 overlap by 4 nucleotides
ABIE41_RS01550: ABIE41_RS01550 - (2Fe-2S)-binding protein, at 309,090 to 310,538
_RS01550
ABIE41_RS01555: ABIE41_RS01555 - (2Fe-2S)-binding protein, at 310,535 to 310,843
_RS01555
ABIE41_RS01560: ABIE41_RS01560 - FAD-dependent oxidoreductase, at 310,824 to 311,957
_RS01560
ABIE41_RS01565: ABIE41_RS01565 - ABC transporter permease, at 311,963 to 312,763
_RS01565
ABIE41_RS01570: ABIE41_RS01570 - ABC transporter permease, at 312,760 to 313,626
_RS01570
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 309.896 kb on - strand, within ABIE41_RS01550 at 309.928 kb on - strand, within ABIE41_RS01550 at 309.929 kb on + strand, within ABIE41_RS01550 at 309.930 kb on - strand, within ABIE41_RS01550 at 310.015 kb on + strand, within ABIE41_RS01550 at 310.015 kb on + strand, within ABIE41_RS01550 at 310.016 kb on - strand, within ABIE41_RS01550 at 310.016 kb on - strand, within ABIE41_RS01550 at 310.016 kb on - strand, within ABIE41_RS01550 at 310.016 kb on - strand, within ABIE41_RS01550 at 310.276 kb on + strand, within ABIE41_RS01550 at 310.327 kb on + strand, within ABIE41_RS01550 at 310.327 kb on + strand, within ABIE41_RS01550 at 310.327 kb on + strand, within ABIE41_RS01550 at 310.327 kb on + strand, within ABIE41_RS01550 at 310.327 kb on + strand, within ABIE41_RS01550 at 310.328 kb on - strand, within ABIE41_RS01550 at 310.382 kb on - strand, within ABIE41_RS01550 at 310.493 kb on + strand at 310.498 kb on + strand at 310.498 kb on + strand at 310.499 kb on - strand at 310.499 kb on - strand at 310.677 kb on + strand, within ABIE41_RS01555 at 310.677 kb on + strand, within ABIE41_RS01555 at 310.678 kb on - strand, within ABIE41_RS01555 at 310.678 kb on - strand, within ABIE41_RS01555 at 310.993 kb on + strand, within ABIE41_RS01560 at 310.993 kb on + strand, within ABIE41_RS01560 at 310.994 kb on - strand, within ABIE41_RS01560 at 310.994 kb on - strand, within ABIE41_RS01560 at 310.994 kb on - strand, within ABIE41_RS01560 at 311.051 kb on + strand, within ABIE41_RS01560 at 311.494 kb on + strand, within ABIE41_RS01560 at 311.494 kb on + strand, within ABIE41_RS01560 at 311.495 kb on - strand, within ABIE41_RS01560 at 311.495 kb on - strand, within ABIE41_RS01560 at 311.758 kb on + strand, within ABIE41_RS01560 at 312.083 kb on - strand, within ABIE41_RS01565 at 312.096 kb on + strand, within ABIE41_RS01565 at 312.096 kb on + strand, within ABIE41_RS01565 at 312.097 kb on - strand, within ABIE41_RS01565 at 312.097 kb on - strand, within ABIE41_RS01565 at 312.304 kb on - strand, within ABIE41_RS01565 at 312.304 kb on - strand, within ABIE41_RS01565 at 312.495 kb on + strand, within ABIE41_RS01565 at 312.600 kb on + strand, within ABIE41_RS01565 at 312.600 kb on + strand, within ABIE41_RS01565 at 312.657 kb on + strand, within ABIE41_RS01565 at 312.657 kb on + strand, within ABIE41_RS01565 at 312.657 kb on + strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.658 kb on - strand, within ABIE41_RS01565 at 312.780 kb on - strand at 312.893 kb on + strand, within ABIE41_RS01570 at 312.893 kb on + strand, within ABIE41_RS01570 at 312.894 kb on - strand, within ABIE41_RS01570
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 309,896 - ABIE41_RS01550 0.56 -0.5 309,928 - ABIE41_RS01550 0.58 -0.0 309,929 + ABIE41_RS01550 0.58 +0.2 309,930 - ABIE41_RS01550 0.58 -0.8 310,015 + ABIE41_RS01550 0.64 -0.1 310,015 + ABIE41_RS01550 0.64 +0.2 310,016 - ABIE41_RS01550 0.64 +0.7 310,016 - ABIE41_RS01550 0.64 +1.2 310,016 - ABIE41_RS01550 0.64 +1.5 310,016 - ABIE41_RS01550 0.64 -2.4 310,276 + ABIE41_RS01550 0.82 +1.5 310,327 + ABIE41_RS01550 0.85 -1.1 310,327 + ABIE41_RS01550 0.85 +0.4 310,327 + ABIE41_RS01550 0.85 -0.4 310,327 + ABIE41_RS01550 0.85 -0.5 310,327 + ABIE41_RS01550 0.85 +0.6 310,328 - ABIE41_RS01550 0.85 -1.4 310,382 - ABIE41_RS01550 0.89 +0.2 310,493 + -0.2 310,498 + -2.6 310,498 + +0.1 310,499 - -0.1 310,499 - -0.5 310,677 + ABIE41_RS01555 0.46 +0.5 310,677 + ABIE41_RS01555 0.46 -1.1 310,678 - ABIE41_RS01555 0.46 +0.3 310,678 - ABIE41_RS01555 0.46 -0.3 310,993 + ABIE41_RS01560 0.15 +1.3 310,993 + ABIE41_RS01560 0.15 -2.7 310,994 - ABIE41_RS01560 0.15 -0.3 310,994 - ABIE41_RS01560 0.15 -0.9 310,994 - ABIE41_RS01560 0.15 +0.6 311,051 + ABIE41_RS01560 0.20 +0.1 311,494 + ABIE41_RS01560 0.59 -1.3 311,494 + ABIE41_RS01560 0.59 +1.3 311,495 - ABIE41_RS01560 0.59 +0.1 311,495 - ABIE41_RS01560 0.59 -0.3 311,758 + ABIE41_RS01560 0.82 +4.1 312,083 - ABIE41_RS01565 0.15 +0.2 312,096 + ABIE41_RS01565 0.17 -1.5 312,096 + ABIE41_RS01565 0.17 +1.1 312,097 - ABIE41_RS01565 0.17 +0.0 312,097 - ABIE41_RS01565 0.17 +0.4 312,304 - ABIE41_RS01565 0.43 -1.1 312,304 - ABIE41_RS01565 0.43 +0.5 312,495 + ABIE41_RS01565 0.66 +0.3 312,600 + ABIE41_RS01565 0.80 +0.5 312,600 + ABIE41_RS01565 0.80 -1.8 312,657 + ABIE41_RS01565 0.87 +1.1 312,657 + ABIE41_RS01565 0.87 +2.1 312,657 + ABIE41_RS01565 0.87 +0.4 312,658 - ABIE41_RS01565 0.87 -0.1 312,658 - ABIE41_RS01565 0.87 -1.7 312,658 - ABIE41_RS01565 0.87 -2.9 312,658 - ABIE41_RS01565 0.87 -0.1 312,780 - +0.4 312,893 + ABIE41_RS01570 0.15 +0.6 312,893 + ABIE41_RS01570 0.15 -0.7 312,894 - ABIE41_RS01570 0.15 +1.1
Or see this region's nucleotide sequence