Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21810

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21800 and ABIE40_RS21805 are separated by 211 nucleotidesABIE40_RS21805 and ABIE40_RS21810 are separated by 0 nucleotidesABIE40_RS21810 and ABIE40_RS21815 are separated by 3 nucleotidesABIE40_RS21815 and ABIE40_RS21820 overlap by 8 nucleotides ABIE40_RS21800: ABIE40_RS21800 - Crp/Fnr family transcriptional regulator, at 486,807 to 487,535 _RS21800 ABIE40_RS21805: ABIE40_RS21805 - hypothetical protein, at 487,747 to 487,980 _RS21805 ABIE40_RS21810: ABIE40_RS21810 - Crp/Fnr family transcriptional regulator, at 487,981 to 488,697 _RS21810 ABIE40_RS21815: ABIE40_RS21815 - metallophosphoesterase, at 488,701 to 489,423 _RS21815 ABIE40_RS21820: ABIE40_RS21820 - nucleotidyltransferase family protein, at 489,416 to 490,195 _RS21820 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 487.037 kb on + strand, within ABIE40_RS21800at 487.037 kb on + strand, within ABIE40_RS21800at 487.037 kb on + strand, within ABIE40_RS21800at 487.038 kb on - strand, within ABIE40_RS21800at 487.038 kb on - strand, within ABIE40_RS21800at 487.153 kb on + strand, within ABIE40_RS21800at 487.153 kb on + strand, within ABIE40_RS21800at 487.153 kb on + strand, within ABIE40_RS21800at 487.153 kb on + strand, within ABIE40_RS21800at 487.153 kb on + strand, within ABIE40_RS21800at 487.154 kb on - strand, within ABIE40_RS21800at 487.154 kb on - strand, within ABIE40_RS21800at 487.154 kb on - strand, within ABIE40_RS21800at 487.154 kb on - strand, within ABIE40_RS21800at 487.281 kb on + strand, within ABIE40_RS21800at 487.426 kb on + strand, within ABIE40_RS21800at 487.560 kb on - strandat 487.627 kb on + strandat 487.729 kb on + strandat 487.730 kb on - strandat 487.730 kb on - strandat 487.791 kb on + strand, within ABIE40_RS21805at 487.792 kb on - strand, within ABIE40_RS21805at 487.846 kb on + strand, within ABIE40_RS21805at 487.846 kb on + strand, within ABIE40_RS21805at 487.846 kb on + strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.847 kb on - strand, within ABIE40_RS21805at 487.853 kb on - strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.861 kb on + strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.862 kb on - strand, within ABIE40_RS21805at 487.906 kb on + strand, within ABIE40_RS21805at 488.033 kb on + strandat 488.034 kb on - strandat 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.124 kb on + strand, within ABIE40_RS21810at 488.125 kb on - strand, within ABIE40_RS21810at 488.262 kb on + strand, within ABIE40_RS21810at 488.262 kb on + strand, within ABIE40_RS21810at 488.380 kb on + strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.381 kb on - strand, within ABIE40_RS21810at 488.388 kb on - strand, within ABIE40_RS21810at 488.388 kb on - strand, within ABIE40_RS21810at 488.409 kb on + strand, within ABIE40_RS21810at 488.409 kb on + strand, within ABIE40_RS21810at 488.410 kb on - strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.411 kb on + strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.412 kb on - strand, within ABIE40_RS21810at 488.549 kb on + strand, within ABIE40_RS21810at 488.549 kb on + strand, within ABIE40_RS21810at 488.550 kb on - strand, within ABIE40_RS21810at 488.550 kb on - strand, within ABIE40_RS21810at 488.602 kb on + strand, within ABIE40_RS21810at 488.602 kb on + strand, within ABIE40_RS21810at 488.603 kb on - strand, within ABIE40_RS21810at 488.720 kb on + strandat 488.720 kb on + strandat 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.795 kb on + strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.796 kb on - strand, within ABIE40_RS21815at 488.886 kb on - strand, within ABIE40_RS21815at 488.886 kb on - strand, within ABIE40_RS21815at 488.930 kb on + strand, within ABIE40_RS21815at 488.931 kb on - strand, within ABIE40_RS21815at 488.931 kb on - strand, within ABIE40_RS21815at 488.931 kb on - strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.325 kb on + strand, within ABIE40_RS21815at 489.348 kb on - strand, within ABIE40_RS21815at 489.408 kb on + strandat 489.494 kb on + strand, within ABIE40_RS21820at 489.495 kb on - strand, within ABIE40_RS21820at 489.516 kb on + strand, within ABIE40_RS21820at 489.517 kb on - strand, within ABIE40_RS21820at 489.517 kb on - strand, within ABIE40_RS21820at 489.517 kb on - strand, within ABIE40_RS21820at 489.687 kb on + strand, within ABIE40_RS21820at 489.687 kb on + strand, within ABIE40_RS21820at 489.687 kb on + strand, within ABIE40_RS21820at 489.688 kb on - strand, within ABIE40_RS21820

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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487,037 + ABIE40_RS21800 0.32 +2.0
487,037 + ABIE40_RS21800 0.32 -0.9
487,037 + ABIE40_RS21800 0.32 -0.0
487,038 - ABIE40_RS21800 0.32 -0.2
487,038 - ABIE40_RS21800 0.32 +2.5
487,153 + ABIE40_RS21800 0.47 -2.1
487,153 + ABIE40_RS21800 0.47 -0.8
487,153 + ABIE40_RS21800 0.47 +0.0
487,153 + ABIE40_RS21800 0.47 +1.0
487,153 + ABIE40_RS21800 0.47 +1.1
487,154 - ABIE40_RS21800 0.48 -0.5
487,154 - ABIE40_RS21800 0.48 -1.1
487,154 - ABIE40_RS21800 0.48 -0.3
487,154 - ABIE40_RS21800 0.48 -0.3
487,281 + ABIE40_RS21800 0.65 -0.5
487,426 + ABIE40_RS21800 0.85 -0.2
487,560 - -1.0
487,627 + +0.6
487,729 + +1.1
487,730 - -0.4
487,730 - +0.4
487,791 + ABIE40_RS21805 0.19 -0.7
487,792 - ABIE40_RS21805 0.19 -1.0
487,846 + ABIE40_RS21805 0.42 +0.1
487,846 + ABIE40_RS21805 0.42 +1.1
487,846 + ABIE40_RS21805 0.42 -1.1
487,847 - ABIE40_RS21805 0.43 +1.0
487,847 - ABIE40_RS21805 0.43 -0.2
487,847 - ABIE40_RS21805 0.43 -1.6
487,847 - ABIE40_RS21805 0.43 -0.9
487,853 - ABIE40_RS21805 0.45 +0.0
487,861 + ABIE40_RS21805 0.49 -1.0
487,861 + ABIE40_RS21805 0.49 -0.5
487,861 + ABIE40_RS21805 0.49 -2.0
487,861 + ABIE40_RS21805 0.49 -0.6
487,861 + ABIE40_RS21805 0.49 -1.1
487,861 + ABIE40_RS21805 0.49 +0.9
487,862 - ABIE40_RS21805 0.49 +1.1
487,862 - ABIE40_RS21805 0.49 +0.2
487,862 - ABIE40_RS21805 0.49 -0.0
487,862 - ABIE40_RS21805 0.49 -1.6
487,906 + ABIE40_RS21805 0.68 -1.0
488,033 + +0.8
488,034 - +0.1
488,124 + ABIE40_RS21810 0.20 -0.0
488,124 + ABIE40_RS21810 0.20 -0.1
488,124 + ABIE40_RS21810 0.20 -0.6
488,124 + ABIE40_RS21810 0.20 -0.5
488,124 + ABIE40_RS21810 0.20 -0.5
488,125 - ABIE40_RS21810 0.20 -2.7
488,262 + ABIE40_RS21810 0.39 +1.2
488,262 + ABIE40_RS21810 0.39 +1.4
488,380 + ABIE40_RS21810 0.56 -0.3
488,381 - ABIE40_RS21810 0.56 +0.5
488,381 - ABIE40_RS21810 0.56 +0.1
488,381 - ABIE40_RS21810 0.56 -0.5
488,381 - ABIE40_RS21810 0.56 -2.1
488,388 - ABIE40_RS21810 0.57 +0.2
488,388 - ABIE40_RS21810 0.57 -0.8
488,409 + ABIE40_RS21810 0.60 -0.3
488,409 + ABIE40_RS21810 0.60 +0.2
488,410 - ABIE40_RS21810 0.60 -0.8
488,411 + ABIE40_RS21810 0.60 -0.4
488,411 + ABIE40_RS21810 0.60 -0.1
488,411 + ABIE40_RS21810 0.60 -1.3
488,411 + ABIE40_RS21810 0.60 -0.0
488,411 + ABIE40_RS21810 0.60 +1.6
488,411 + ABIE40_RS21810 0.60 +0.2
488,411 + ABIE40_RS21810 0.60 -0.4
488,411 + ABIE40_RS21810 0.60 -0.0
488,411 + ABIE40_RS21810 0.60 +0.4
488,411 + ABIE40_RS21810 0.60 -1.1
488,411 + ABIE40_RS21810 0.60 -0.6
488,412 - ABIE40_RS21810 0.60 -0.8
488,412 - ABIE40_RS21810 0.60 -1.3
488,412 - ABIE40_RS21810 0.60 -1.3
488,412 - ABIE40_RS21810 0.60 +0.4
488,412 - ABIE40_RS21810 0.60 +0.0
488,412 - ABIE40_RS21810 0.60 -1.4
488,412 - ABIE40_RS21810 0.60 -1.0
488,412 - ABIE40_RS21810 0.60 +0.5
488,412 - ABIE40_RS21810 0.60 +1.5
488,549 + ABIE40_RS21810 0.79 +0.3
488,549 + ABIE40_RS21810 0.79 -1.5
488,550 - ABIE40_RS21810 0.79 -1.1
488,550 - ABIE40_RS21810 0.79 -0.0
488,602 + ABIE40_RS21810 0.87 +0.2
488,602 + ABIE40_RS21810 0.87 +0.9
488,603 - ABIE40_RS21810 0.87 +0.4
488,720 + +0.3
488,720 + +0.1
488,795 + ABIE40_RS21815 0.13 +1.8
488,795 + ABIE40_RS21815 0.13 +0.3
488,795 + ABIE40_RS21815 0.13 -1.0
488,795 + ABIE40_RS21815 0.13 +0.4
488,795 + ABIE40_RS21815 0.13 -0.4
488,795 + ABIE40_RS21815 0.13 -0.8
488,795 + ABIE40_RS21815 0.13 -1.0
488,795 + ABIE40_RS21815 0.13 -2.2
488,796 - ABIE40_RS21815 0.13 +0.8
488,796 - ABIE40_RS21815 0.13 -1.2
488,796 - ABIE40_RS21815 0.13 -0.9
488,796 - ABIE40_RS21815 0.13 -0.2
488,796 - ABIE40_RS21815 0.13 +0.3
488,796 - ABIE40_RS21815 0.13 -1.9
488,796 - ABIE40_RS21815 0.13 -0.4
488,796 - ABIE40_RS21815 0.13 -1.8
488,796 - ABIE40_RS21815 0.13 -0.7
488,886 - ABIE40_RS21815 0.26 +1.4
488,886 - ABIE40_RS21815 0.26 -0.6
488,930 + ABIE40_RS21815 0.32 +0.6
488,931 - ABIE40_RS21815 0.32 +0.4
488,931 - ABIE40_RS21815 0.32 +1.7
488,931 - ABIE40_RS21815 0.32 -0.3
489,325 + ABIE40_RS21815 0.86 +0.2
489,325 + ABIE40_RS21815 0.86 -1.3
489,325 + ABIE40_RS21815 0.86 -0.9
489,325 + ABIE40_RS21815 0.86 -0.6
489,348 - ABIE40_RS21815 0.89 -0.5
489,408 + -0.1
489,494 + ABIE40_RS21820 0.10 -0.2
489,495 - ABIE40_RS21820 0.10 -0.4
489,516 + ABIE40_RS21820 0.13 +1.2
489,517 - ABIE40_RS21820 0.13 -0.3
489,517 - ABIE40_RS21820 0.13 -1.4
489,517 - ABIE40_RS21820 0.13 +1.5
489,687 + ABIE40_RS21820 0.35 -1.5
489,687 + ABIE40_RS21820 0.35 -0.8
489,687 + ABIE40_RS21820 0.35 +0.5
489,688 - ABIE40_RS21820 0.35 -1.3

Or see this region's nucleotide sequence