Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05720

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS05715 and ABIE40_RS05720 are separated by 182 nucleotidesABIE40_RS05720 and ABIE40_RS05725 are separated by 280 nucleotides ABIE40_RS05715: ABIE40_RS05715 - PAS domain-containing sensor histidine kinase, at 1,121,914 to 1,124,232 _RS05715 ABIE40_RS05720: ABIE40_RS05720 - aminopeptidase N, at 1,124,415 to 1,127,063 _RS05720 ABIE40_RS05725: ABIE40_RS05725 - DMT family transporter, at 1,127,344 to 1,128,276 _RS05725 Position (kb) 1124 1125 1126 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1123.517 kb on + strand, within ABIE40_RS05715at 1123.518 kb on - strand, within ABIE40_RS05715at 1123.518 kb on - strand, within ABIE40_RS05715at 1123.518 kb on - strand, within ABIE40_RS05715at 1123.520 kb on + strand, within ABIE40_RS05715at 1123.520 kb on + strand, within ABIE40_RS05715at 1123.521 kb on - strand, within ABIE40_RS05715at 1123.521 kb on - strand, within ABIE40_RS05715at 1123.521 kb on - strand, within ABIE40_RS05715at 1123.521 kb on - strand, within ABIE40_RS05715at 1123.521 kb on - strand, within ABIE40_RS05715at 1123.555 kb on - strand, within ABIE40_RS05715at 1123.637 kb on + strand, within ABIE40_RS05715at 1123.637 kb on + strand, within ABIE40_RS05715at 1123.637 kb on + strand, within ABIE40_RS05715at 1123.779 kb on - strand, within ABIE40_RS05715at 1124.003 kb on + strandat 1124.004 kb on - strandat 1124.237 kb on - strandat 1124.239 kb on - strandat 1124.239 kb on - strandat 1124.349 kb on - strandat 1124.429 kb on + strandat 1124.430 kb on - strandat 1124.555 kb on + strandat 1124.971 kb on + strand, within ABIE40_RS05720at 1124.971 kb on + strand, within ABIE40_RS05720at 1124.971 kb on + strand, within ABIE40_RS05720at 1124.971 kb on + strand, within ABIE40_RS05720at 1124.971 kb on + strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1124.972 kb on - strand, within ABIE40_RS05720at 1125.523 kb on + strand, within ABIE40_RS05720at 1125.524 kb on - strand, within ABIE40_RS05720at 1125.597 kb on - strand, within ABIE40_RS05720at 1125.682 kb on + strand, within ABIE40_RS05720at 1125.682 kb on + strand, within ABIE40_RS05720at 1125.682 kb on + strand, within ABIE40_RS05720at 1125.682 kb on + strand, within ABIE40_RS05720at 1125.682 kb on + strand, within ABIE40_RS05720at 1125.683 kb on - strand, within ABIE40_RS05720at 1125.683 kb on - strand, within ABIE40_RS05720at 1125.683 kb on - strand, within ABIE40_RS05720at 1125.683 kb on - strand, within ABIE40_RS05720at 1125.724 kb on - strand, within ABIE40_RS05720at 1125.725 kb on - strand, within ABIE40_RS05720at 1125.823 kb on + strand, within ABIE40_RS05720at 1125.823 kb on + strand, within ABIE40_RS05720at 1125.824 kb on - strand, within ABIE40_RS05720at 1125.875 kb on + strand, within ABIE40_RS05720at 1125.876 kb on - strand, within ABIE40_RS05720at 1125.876 kb on - strand, within ABIE40_RS05720at 1126.147 kb on + strand, within ABIE40_RS05720at 1126.147 kb on + strand, within ABIE40_RS05720at 1126.148 kb on - strand, within ABIE40_RS05720at 1126.180 kb on + strand, within ABIE40_RS05720at 1126.219 kb on + strand, within ABIE40_RS05720at 1126.219 kb on + strand, within ABIE40_RS05720at 1126.219 kb on + strand, within ABIE40_RS05720at 1126.219 kb on + strand, within ABIE40_RS05720at 1126.219 kb on + strand, within ABIE40_RS05720at 1126.219 kb on + strand, within ABIE40_RS05720at 1126.220 kb on - strand, within ABIE40_RS05720at 1126.220 kb on - strand, within ABIE40_RS05720at 1126.220 kb on - strand, within ABIE40_RS05720at 1126.309 kb on + strand, within ABIE40_RS05720at 1126.309 kb on + strand, within ABIE40_RS05720at 1126.309 kb on + strand, within ABIE40_RS05720at 1126.310 kb on - strand, within ABIE40_RS05720at 1126.310 kb on - strand, within ABIE40_RS05720at 1126.370 kb on - strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.402 kb on + strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.403 kb on - strand, within ABIE40_RS05720at 1126.446 kb on - strand, within ABIE40_RS05720at 1126.446 kb on - strand, within ABIE40_RS05720at 1126.446 kb on - strand, within ABIE40_RS05720at 1126.446 kb on - strand, within ABIE40_RS05720at 1126.446 kb on - strand, within ABIE40_RS05720at 1126.446 kb on - strand, within ABIE40_RS05720at 1126.451 kb on - strand, within ABIE40_RS05720at 1126.489 kb on + strand, within ABIE40_RS05720at 1126.489 kb on + strand, within ABIE40_RS05720at 1126.490 kb on - strand, within ABIE40_RS05720at 1126.619 kb on + strand, within ABIE40_RS05720at 1126.619 kb on + strand, within ABIE40_RS05720at 1126.619 kb on + strand, within ABIE40_RS05720at 1126.619 kb on + strand, within ABIE40_RS05720at 1126.619 kb on + strand, within ABIE40_RS05720at 1126.619 kb on + strand, within ABIE40_RS05720at 1126.620 kb on - strand, within ABIE40_RS05720at 1126.620 kb on - strand, within ABIE40_RS05720at 1126.620 kb on - strand, within ABIE40_RS05720at 1126.620 kb on - strand, within ABIE40_RS05720at 1126.620 kb on - strand, within ABIE40_RS05720at 1126.620 kb on - strand, within ABIE40_RS05720at 1126.621 kb on + strand, within ABIE40_RS05720at 1126.621 kb on + strand, within ABIE40_RS05720at 1126.622 kb on - strand, within ABIE40_RS05720at 1126.654 kb on + strand, within ABIE40_RS05720at 1126.655 kb on - strand, within ABIE40_RS05720at 1126.655 kb on - strand, within ABIE40_RS05720at 1126.661 kb on + strand, within ABIE40_RS05720at 1126.661 kb on + strand, within ABIE40_RS05720at 1126.662 kb on - strand, within ABIE40_RS05720at 1126.696 kb on + strand, within ABIE40_RS05720at 1126.696 kb on + strand, within ABIE40_RS05720at 1126.696 kb on + strand, within ABIE40_RS05720at 1126.696 kb on + strand, within ABIE40_RS05720at 1126.696 kb on + strand, within ABIE40_RS05720at 1126.697 kb on - strand, within ABIE40_RS05720at 1126.697 kb on - strand, within ABIE40_RS05720at 1126.697 kb on - strand, within ABIE40_RS05720at 1126.697 kb on - strand, within ABIE40_RS05720at 1126.697 kb on - strand, within ABIE40_RS05720at 1126.697 kb on - strand, within ABIE40_RS05720at 1126.714 kb on + strand, within ABIE40_RS05720at 1126.826 kb on + strandat 1126.827 kb on - strandat 1126.827 kb on - strandat 1126.828 kb on + strandat 1126.828 kb on + strandat 1126.828 kb on + strandat 1126.828 kb on + strandat 1126.829 kb on - strandat 1126.829 kb on - strandat 1126.829 kb on - strandat 1127.023 kb on + strandat 1127.057 kb on + strandat 1127.057 kb on + strandat 1127.057 kb on + strandat 1127.063 kb on + strandat 1127.063 kb on + strandat 1127.063 kb on + strandat 1127.064 kb on - strandat 1127.064 kb on - strandat 1127.064 kb on - strandat 1127.064 kb on - strandat 1127.090 kb on + strandat 1127.090 kb on + strandat 1127.091 kb on - strandat 1127.141 kb on + strandat 1127.141 kb on + strandat 1127.142 kb on - strandat 1127.142 kb on - strandat 1127.147 kb on - strandat 1127.147 kb on - strandat 1127.147 kb on - strandat 1127.147 kb on - strandat 1127.147 kb on - strandat 1127.147 kb on - strandat 1127.158 kb on + strandat 1127.158 kb on + strandat 1127.473 kb on + strand, within ABIE40_RS05725at 1127.473 kb on + strand, within ABIE40_RS05725at 1127.473 kb on + strand, within ABIE40_RS05725at 1127.474 kb on - strand, within ABIE40_RS05725at 1127.474 kb on - strand, within ABIE40_RS05725at 1127.474 kb on - strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.509 kb on + strand, within ABIE40_RS05725at 1127.510 kb on - strand, within ABIE40_RS05725at 1127.510 kb on - strand, within ABIE40_RS05725at 1127.519 kb on - strand, within ABIE40_RS05725at 1127.545 kb on + strand, within ABIE40_RS05725at 1127.560 kb on - strand, within ABIE40_RS05725at 1127.614 kb on + strand, within ABIE40_RS05725at 1127.614 kb on + strand, within ABIE40_RS05725at 1127.659 kb on + strand, within ABIE40_RS05725at 1127.660 kb on - strand, within ABIE40_RS05725at 1127.660 kb on - strand, within ABIE40_RS05725at 1127.921 kb on + strand, within ABIE40_RS05725at 1127.921 kb on + strand, within ABIE40_RS05725at 1127.921 kb on + strand, within ABIE40_RS05725at 1127.922 kb on - strand, within ABIE40_RS05725at 1127.926 kb on + strand, within ABIE40_RS05725at 1127.926 kb on + strand, within ABIE40_RS05725at 1127.926 kb on + strand, within ABIE40_RS05725at 1127.926 kb on + strand, within ABIE40_RS05725at 1127.926 kb on + strand, within ABIE40_RS05725at 1127.927 kb on - strand, within ABIE40_RS05725at 1128.007 kb on + strand, within ABIE40_RS05725at 1128.008 kb on - strand, within ABIE40_RS05725

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,123,517 + ABIE40_RS05715 0.69 -1.2
1,123,518 - ABIE40_RS05715 0.69 -2.4
1,123,518 - ABIE40_RS05715 0.69 -0.5
1,123,518 - ABIE40_RS05715 0.69 -2.9
1,123,520 + ABIE40_RS05715 0.69 -0.5
1,123,520 + ABIE40_RS05715 0.69 +0.3
1,123,521 - ABIE40_RS05715 0.69 -0.3
1,123,521 - ABIE40_RS05715 0.69 +0.3
1,123,521 - ABIE40_RS05715 0.69 +2.3
1,123,521 - ABIE40_RS05715 0.69 +3.6
1,123,521 - ABIE40_RS05715 0.69 +2.3
1,123,555 - ABIE40_RS05715 0.71 -1.6
1,123,637 + ABIE40_RS05715 0.74 +2.8
1,123,637 + ABIE40_RS05715 0.74 -0.9
1,123,637 + ABIE40_RS05715 0.74 -0.5
1,123,779 - ABIE40_RS05715 0.80 +2.3
1,124,003 + -0.7
1,124,004 - -2.1
1,124,237 - +0.4
1,124,239 - -0.3
1,124,239 - -0.9
1,124,349 - +2.7
1,124,429 + -0.0
1,124,430 - -0.1
1,124,555 + -1.2
1,124,971 + ABIE40_RS05720 0.21 -2.2
1,124,971 + ABIE40_RS05720 0.21 -0.0
1,124,971 + ABIE40_RS05720 0.21 +1.1
1,124,971 + ABIE40_RS05720 0.21 +1.0
1,124,971 + ABIE40_RS05720 0.21 +0.5
1,124,972 - ABIE40_RS05720 0.21 -1.2
1,124,972 - ABIE40_RS05720 0.21 -0.7
1,124,972 - ABIE40_RS05720 0.21 +0.7
1,124,972 - ABIE40_RS05720 0.21 -0.7
1,124,972 - ABIE40_RS05720 0.21 +0.5
1,124,972 - ABIE40_RS05720 0.21 +0.3
1,124,972 - ABIE40_RS05720 0.21 -1.5
1,125,523 + ABIE40_RS05720 0.42 -0.4
1,125,524 - ABIE40_RS05720 0.42 -1.0
1,125,597 - ABIE40_RS05720 0.45 -0.5
1,125,682 + ABIE40_RS05720 0.48 -1.0
1,125,682 + ABIE40_RS05720 0.48 +0.8
1,125,682 + ABIE40_RS05720 0.48 +0.9
1,125,682 + ABIE40_RS05720 0.48 -0.1
1,125,682 + ABIE40_RS05720 0.48 +0.1
1,125,683 - ABIE40_RS05720 0.48 -2.3
1,125,683 - ABIE40_RS05720 0.48 -0.7
1,125,683 - ABIE40_RS05720 0.48 +1.6
1,125,683 - ABIE40_RS05720 0.48 -0.4
1,125,724 - ABIE40_RS05720 0.49 -0.7
1,125,725 - ABIE40_RS05720 0.49 +2.6
1,125,823 + ABIE40_RS05720 0.53 +0.5
1,125,823 + ABIE40_RS05720 0.53 -0.3
1,125,824 - ABIE40_RS05720 0.53 -1.4
1,125,875 + ABIE40_RS05720 0.55 +1.9
1,125,876 - ABIE40_RS05720 0.55 -1.9
1,125,876 - ABIE40_RS05720 0.55 -0.1
1,126,147 + ABIE40_RS05720 0.65 +0.9
1,126,147 + ABIE40_RS05720 0.65 -0.1
1,126,148 - ABIE40_RS05720 0.65 +0.4
1,126,180 + ABIE40_RS05720 0.67 -0.2
1,126,219 + ABIE40_RS05720 0.68 +0.4
1,126,219 + ABIE40_RS05720 0.68 +0.1
1,126,219 + ABIE40_RS05720 0.68 +0.3
1,126,219 + ABIE40_RS05720 0.68 -0.9
1,126,219 + ABIE40_RS05720 0.68 -0.3
1,126,219 + ABIE40_RS05720 0.68 +0.5
1,126,220 - ABIE40_RS05720 0.68 -0.5
1,126,220 - ABIE40_RS05720 0.68 +0.1
1,126,220 - ABIE40_RS05720 0.68 -0.4
1,126,309 + ABIE40_RS05720 0.71 +3.3
1,126,309 + ABIE40_RS05720 0.71 +0.9
1,126,309 + ABIE40_RS05720 0.71 -0.6
1,126,310 - ABIE40_RS05720 0.72 -0.5
1,126,310 - ABIE40_RS05720 0.72 -0.6
1,126,370 - ABIE40_RS05720 0.74 +0.5
1,126,402 + ABIE40_RS05720 0.75 -0.2
1,126,402 + ABIE40_RS05720 0.75 -0.9
1,126,402 + ABIE40_RS05720 0.75 +0.9
1,126,402 + ABIE40_RS05720 0.75 +0.5
1,126,402 + ABIE40_RS05720 0.75 -0.6
1,126,402 + ABIE40_RS05720 0.75 -1.1
1,126,402 + ABIE40_RS05720 0.75 -0.5
1,126,403 - ABIE40_RS05720 0.75 -0.9
1,126,403 - ABIE40_RS05720 0.75 +0.0
1,126,403 - ABIE40_RS05720 0.75 -0.3
1,126,403 - ABIE40_RS05720 0.75 +1.1
1,126,403 - ABIE40_RS05720 0.75 -0.7
1,126,403 - ABIE40_RS05720 0.75 +0.7
1,126,403 - ABIE40_RS05720 0.75 -0.5
1,126,403 - ABIE40_RS05720 0.75 -0.1
1,126,403 - ABIE40_RS05720 0.75 -3.2
1,126,446 - ABIE40_RS05720 0.77 -0.6
1,126,446 - ABIE40_RS05720 0.77 -0.5
1,126,446 - ABIE40_RS05720 0.77 -0.7
1,126,446 - ABIE40_RS05720 0.77 -0.8
1,126,446 - ABIE40_RS05720 0.77 -0.3
1,126,446 - ABIE40_RS05720 0.77 -1.5
1,126,451 - ABIE40_RS05720 0.77 +0.5
1,126,489 + ABIE40_RS05720 0.78 -0.7
1,126,489 + ABIE40_RS05720 0.78 -0.8
1,126,490 - ABIE40_RS05720 0.78 +0.3
1,126,619 + ABIE40_RS05720 0.83 +1.3
1,126,619 + ABIE40_RS05720 0.83 +1.6
1,126,619 + ABIE40_RS05720 0.83 -0.5
1,126,619 + ABIE40_RS05720 0.83 -0.4
1,126,619 + ABIE40_RS05720 0.83 -1.6
1,126,619 + ABIE40_RS05720 0.83 -0.7
1,126,620 - ABIE40_RS05720 0.83 -0.3
1,126,620 - ABIE40_RS05720 0.83 -1.9
1,126,620 - ABIE40_RS05720 0.83 -1.2
1,126,620 - ABIE40_RS05720 0.83 +0.1
1,126,620 - ABIE40_RS05720 0.83 -0.9
1,126,620 - ABIE40_RS05720 0.83 +0.3
1,126,621 + ABIE40_RS05720 0.83 -0.4
1,126,621 + ABIE40_RS05720 0.83 -1.0
1,126,622 - ABIE40_RS05720 0.83 +0.9
1,126,654 + ABIE40_RS05720 0.85 -0.3
1,126,655 - ABIE40_RS05720 0.85 -1.8
1,126,655 - ABIE40_RS05720 0.85 -0.3
1,126,661 + ABIE40_RS05720 0.85 -0.7
1,126,661 + ABIE40_RS05720 0.85 -0.1
1,126,662 - ABIE40_RS05720 0.85 +0.3
1,126,696 + ABIE40_RS05720 0.86 -1.2
1,126,696 + ABIE40_RS05720 0.86 -0.7
1,126,696 + ABIE40_RS05720 0.86 -0.1
1,126,696 + ABIE40_RS05720 0.86 -0.3
1,126,696 + ABIE40_RS05720 0.86 +0.5
1,126,697 - ABIE40_RS05720 0.86 -1.9
1,126,697 - ABIE40_RS05720 0.86 +0.8
1,126,697 - ABIE40_RS05720 0.86 +1.0
1,126,697 - ABIE40_RS05720 0.86 +0.3
1,126,697 - ABIE40_RS05720 0.86 +0.4
1,126,697 - ABIE40_RS05720 0.86 -0.0
1,126,714 + ABIE40_RS05720 0.87 -0.5
1,126,826 + -2.9
1,126,827 - -1.2
1,126,827 - +0.1
1,126,828 + -0.5
1,126,828 + -0.8
1,126,828 + +1.1
1,126,828 + +0.4
1,126,829 - -1.6
1,126,829 - +0.8
1,126,829 - -0.7
1,127,023 + -0.2
1,127,057 + -0.2
1,127,057 + +1.2
1,127,057 + -1.2
1,127,063 + -2.9
1,127,063 + -0.4
1,127,063 + -1.3
1,127,064 - -0.6
1,127,064 - -0.9
1,127,064 - -0.6
1,127,064 - -1.1
1,127,090 + -1.1
1,127,090 + -0.5
1,127,091 - -0.7
1,127,141 + -0.5
1,127,141 + -0.4
1,127,142 - -1.6
1,127,142 - -0.5
1,127,147 - +1.1
1,127,147 - +1.3
1,127,147 - +0.1
1,127,147 - -0.0
1,127,147 - -1.1
1,127,147 - -1.2
1,127,158 + -0.3
1,127,158 + -0.1
1,127,473 + ABIE40_RS05725 0.14 -0.1
1,127,473 + ABIE40_RS05725 0.14 +1.1
1,127,473 + ABIE40_RS05725 0.14 -0.3
1,127,474 - ABIE40_RS05725 0.14 +0.2
1,127,474 - ABIE40_RS05725 0.14 -0.7
1,127,474 - ABIE40_RS05725 0.14 -1.1
1,127,509 + ABIE40_RS05725 0.18 -1.6
1,127,509 + ABIE40_RS05725 0.18 -1.3
1,127,509 + ABIE40_RS05725 0.18 -1.1
1,127,509 + ABIE40_RS05725 0.18 +0.0
1,127,509 + ABIE40_RS05725 0.18 -0.1
1,127,509 + ABIE40_RS05725 0.18 -0.5
1,127,509 + ABIE40_RS05725 0.18 +0.8
1,127,509 + ABIE40_RS05725 0.18 -0.5
1,127,509 + ABIE40_RS05725 0.18 -1.5
1,127,509 + ABIE40_RS05725 0.18 -1.3
1,127,510 - ABIE40_RS05725 0.18 -0.9
1,127,510 - ABIE40_RS05725 0.18 +0.2
1,127,519 - ABIE40_RS05725 0.19 -0.5
1,127,545 + ABIE40_RS05725 0.22 +0.2
1,127,560 - ABIE40_RS05725 0.23 +0.2
1,127,614 + ABIE40_RS05725 0.29 -1.3
1,127,614 + ABIE40_RS05725 0.29 +2.5
1,127,659 + ABIE40_RS05725 0.34 +2.3
1,127,660 - ABIE40_RS05725 0.34 +0.9
1,127,660 - ABIE40_RS05725 0.34 -0.0
1,127,921 + ABIE40_RS05725 0.62 -0.3
1,127,921 + ABIE40_RS05725 0.62 +0.9
1,127,921 + ABIE40_RS05725 0.62 -0.3
1,127,922 - ABIE40_RS05725 0.62 -2.2
1,127,926 + ABIE40_RS05725 0.62 -1.6
1,127,926 + ABIE40_RS05725 0.62 -1.0
1,127,926 + ABIE40_RS05725 0.62 -0.3
1,127,926 + ABIE40_RS05725 0.62 -0.2
1,127,926 + ABIE40_RS05725 0.62 -0.9
1,127,927 - ABIE40_RS05725 0.62 -0.1
1,128,007 + ABIE40_RS05725 0.71 -1.0
1,128,008 - ABIE40_RS05725 0.71 +1.0

Or see this region's nucleotide sequence