Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03435 and ABIE40_RS03440 are separated by 7 nucleotides ABIE40_RS03440 and ABIE40_RS03445 are separated by 57 nucleotides ABIE40_RS03445 and ABIE40_RS03450 are separated by 1 nucleotides
ABIE40_RS03435: ABIE40_RS03435 - exopolyphosphatase, at 682,255 to 683,799
_RS03435
ABIE40_RS03440: ABIE40_RS03440 - RlmE family RNA methyltransferase, at 683,807 to 684,526
_RS03440
ABIE40_RS03445: ABIE40_RS03445 - VOC family protein, at 684,584 to 684,967
_RS03445
ABIE40_RS03450: ABIE40_RS03450 - DHA2 family efflux MFS transporter permease subunit, at 684,969 to 686,393
_RS03450
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 683.797 kb on + strand at 684.551 kb on - strand at 684.551 kb on - strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.583 kb on + strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.584 kb on - strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.593 kb on + strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.594 kb on - strand at 684.638 kb on + strand, within ABIE40_RS03445 at 684.638 kb on + strand, within ABIE40_RS03445 at 684.639 kb on - strand, within ABIE40_RS03445 at 684.639 kb on - strand, within ABIE40_RS03445 at 684.639 kb on - strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.830 kb on + strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.831 kb on - strand, within ABIE40_RS03445 at 684.911 kb on + strand, within ABIE40_RS03445 at 684.911 kb on + strand, within ABIE40_RS03445 at 684.912 kb on - strand, within ABIE40_RS03445 at 684.912 kb on - strand, within ABIE40_RS03445 at 684.912 kb on - strand, within ABIE40_RS03445 at 684.970 kb on + strand at 684.971 kb on - strand at 684.971 kb on - strand at 684.971 kb on - strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.108 kb on + strand at 685.109 kb on - strand at 685.109 kb on - strand at 685.118 kb on + strand, within ABIE40_RS03450 at 685.119 kb on - strand, within ABIE40_RS03450 at 685.156 kb on + strand, within ABIE40_RS03450 at 685.156 kb on + strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.157 kb on - strand, within ABIE40_RS03450 at 685.379 kb on + strand, within ABIE40_RS03450
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 683,797 + -1.7 684,551 - +0.9 684,551 - -0.9 684,583 + -1.4 684,583 + +0.7 684,583 + +0.6 684,583 + -0.7 684,583 + +0.5 684,583 + +0.9 684,583 + +0.2 684,583 + -0.9 684,583 + +0.3 684,583 + -0.1 684,583 + -1.4 684,583 + -0.5 684,584 - +1.2 684,584 - -0.7 684,584 - -0.4 684,584 - -0.8 684,584 - -0.1 684,584 - -0.5 684,584 - -1.4 684,584 - -0.3 684,584 - +4.0 684,593 + +0.4 684,593 + +2.2 684,593 + +0.5 684,593 + -0.5 684,593 + -2.3 684,594 - +0.8 684,594 - -1.2 684,594 - -0.0 684,594 - +1.2 684,594 - +0.0 684,594 - +0.2 684,594 - +0.2 684,594 - +0.1 684,594 - +0.1 684,594 - +0.4 684,638 + ABIE40_RS03445 0.14 -0.5 684,638 + ABIE40_RS03445 0.14 -1.1 684,639 - ABIE40_RS03445 0.14 +0.2 684,639 - ABIE40_RS03445 0.14 -0.4 684,639 - ABIE40_RS03445 0.14 +0.8 684,830 + ABIE40_RS03445 0.64 -2.7 684,830 + ABIE40_RS03445 0.64 -0.1 684,830 + ABIE40_RS03445 0.64 +2.8 684,830 + ABIE40_RS03445 0.64 -1.7 684,831 - ABIE40_RS03445 0.64 +2.5 684,831 - ABIE40_RS03445 0.64 +1.5 684,831 - ABIE40_RS03445 0.64 -0.7 684,831 - ABIE40_RS03445 0.64 +1.0 684,831 - ABIE40_RS03445 0.64 -0.5 684,831 - ABIE40_RS03445 0.64 -0.2 684,911 + ABIE40_RS03445 0.85 -2.1 684,911 + ABIE40_RS03445 0.85 +0.9 684,912 - ABIE40_RS03445 0.85 +2.1 684,912 - ABIE40_RS03445 0.85 +0.1 684,912 - ABIE40_RS03445 0.85 +0.2 684,970 + +2.2 684,971 - +0.6 684,971 - -0.5 684,971 - -0.9 685,108 + +1.5 685,108 + +1.5 685,108 + -1.9 685,108 + -2.5 685,108 + -0.8 685,109 - +1.0 685,109 - -1.8 685,118 + ABIE40_RS03450 0.10 +0.2 685,119 - ABIE40_RS03450 0.11 -0.9 685,156 + ABIE40_RS03450 0.13 +1.1 685,156 + ABIE40_RS03450 0.13 -1.1 685,157 - ABIE40_RS03450 0.13 -1.8 685,157 - ABIE40_RS03450 0.13 +0.6 685,157 - ABIE40_RS03450 0.13 +0.5 685,157 - ABIE40_RS03450 0.13 -1.1 685,157 - ABIE40_RS03450 0.13 +1.3 685,379 + ABIE40_RS03450 0.29 -1.5
Or see this region's nucleotide sequence