Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02795 and ABIE40_RS02800 overlap by 4 nucleotides ABIE40_RS02800 and ABIE40_RS02805 are separated by 2 nucleotides ABIE40_RS02805 and ABIE40_RS02810 overlap by 14 nucleotides
ABIE40_RS02795: ABIE40_RS02795 - VOC family protein, at 550,559 to 552,184
_RS02795
ABIE40_RS02800: ABIE40_RS02800 - response regulator, at 552,181 to 553,803
_RS02800
ABIE40_RS02805: ABIE40_RS02805 - response regulator, at 553,806 to 554,231
_RS02805
ABIE40_RS02810: ABIE40_RS02810 - PAS domain S-box protein, at 554,218 to 556,365
_RS02810
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 551.361 kb on + strand, within ABIE40_RS02795 at 551.361 kb on + strand, within ABIE40_RS02795 at 551.361 kb on + strand, within ABIE40_RS02795 at 551.361 kb on + strand, within ABIE40_RS02795 at 551.362 kb on - strand, within ABIE40_RS02795 at 551.362 kb on - strand, within ABIE40_RS02795 at 551.362 kb on - strand, within ABIE40_RS02795 at 551.362 kb on - strand, within ABIE40_RS02795 at 551.376 kb on + strand, within ABIE40_RS02795 at 551.376 kb on + strand, within ABIE40_RS02795 at 551.376 kb on + strand, within ABIE40_RS02795 at 551.376 kb on + strand, within ABIE40_RS02795 at 551.377 kb on - strand, within ABIE40_RS02795 at 551.395 kb on + strand, within ABIE40_RS02795 at 551.395 kb on + strand, within ABIE40_RS02795 at 551.396 kb on - strand, within ABIE40_RS02795 at 551.396 kb on - strand, within ABIE40_RS02795 at 551.396 kb on - strand, within ABIE40_RS02795 at 551.850 kb on + strand, within ABIE40_RS02795 at 551.979 kb on + strand, within ABIE40_RS02795 at 551.979 kb on + strand, within ABIE40_RS02795 at 551.980 kb on - strand, within ABIE40_RS02795 at 551.980 kb on - strand, within ABIE40_RS02795 at 552.037 kb on + strand at 552.054 kb on + strand at 552.104 kb on + strand at 552.105 kb on - strand at 552.105 kb on - strand at 552.105 kb on - strand at 552.105 kb on - strand at 552.105 kb on - strand at 552.133 kb on - strand at 552.164 kb on + strand at 552.164 kb on + strand at 552.164 kb on + strand at 552.165 kb on - strand at 552.165 kb on - strand at 552.165 kb on - strand at 552.165 kb on - strand at 552.174 kb on - strand at 552.176 kb on + strand at 552.177 kb on - strand at 552.177 kb on - strand at 552.177 kb on - strand at 552.177 kb on - strand at 552.177 kb on - strand at 552.184 kb on + strand at 552.184 kb on + strand at 552.184 kb on + strand at 552.185 kb on - strand at 552.185 kb on - strand at 552.229 kb on + strand at 552.229 kb on + strand at 552.230 kb on - strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.315 kb on + strand at 552.316 kb on - strand at 552.316 kb on - strand at 552.316 kb on - strand at 552.316 kb on - strand at 552.317 kb on + strand at 552.317 kb on + strand at 552.317 kb on + strand at 552.317 kb on + strand at 552.317 kb on + strand at 552.317 kb on + strand at 552.317 kb on + strand at 552.318 kb on - strand at 552.318 kb on - strand at 552.318 kb on - strand at 552.391 kb on + strand, within ABIE40_RS02800 at 552.430 kb on + strand, within ABIE40_RS02800 at 552.430 kb on + strand, within ABIE40_RS02800 at 552.592 kb on + strand, within ABIE40_RS02800 at 552.592 kb on + strand, within ABIE40_RS02800 at 552.592 kb on + strand, within ABIE40_RS02800 at 552.593 kb on - strand, within ABIE40_RS02800 at 552.621 kb on + strand, within ABIE40_RS02800 at 553.008 kb on - strand, within ABIE40_RS02800 at 553.239 kb on + strand, within ABIE40_RS02800 at 553.240 kb on - strand, within ABIE40_RS02800 at 553.240 kb on - strand, within ABIE40_RS02800 at 553.240 kb on - strand, within ABIE40_RS02800 at 553.262 kb on + strand, within ABIE40_RS02800 at 553.262 kb on + strand, within ABIE40_RS02800 at 553.263 kb on - strand, within ABIE40_RS02800 at 553.491 kb on - strand, within ABIE40_RS02800 at 553.628 kb on + strand, within ABIE40_RS02800 at 553.628 kb on + strand, within ABIE40_RS02800 at 553.629 kb on - strand, within ABIE40_RS02800 at 553.629 kb on - strand, within ABIE40_RS02800 at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.709 kb on + strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.710 kb on - strand at 553.765 kb on - strand at 553.844 kb on - strand at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.903 kb on + strand, within ABIE40_RS02805 at 553.904 kb on - strand, within ABIE40_RS02805 at 553.904 kb on - strand, within ABIE40_RS02805 at 553.904 kb on - strand, within ABIE40_RS02805 at 553.904 kb on - strand, within ABIE40_RS02805 at 553.904 kb on - strand, within ABIE40_RS02805 at 553.907 kb on + strand, within ABIE40_RS02805 at 553.907 kb on + strand, within ABIE40_RS02805 at 553.907 kb on + strand, within ABIE40_RS02805 at 553.908 kb on - strand, within ABIE40_RS02805 at 553.924 kb on + strand, within ABIE40_RS02805 at 553.924 kb on + strand, within ABIE40_RS02805 at 553.924 kb on + strand, within ABIE40_RS02805 at 553.925 kb on - strand, within ABIE40_RS02805 at 553.925 kb on - strand, within ABIE40_RS02805 at 554.056 kb on - strand, within ABIE40_RS02805 at 554.259 kb on + strand at 554.264 kb on + strand at 554.264 kb on + strand at 554.264 kb on + strand at 554.265 kb on - strand at 554.417 kb on + strand at 554.417 kb on + strand at 554.417 kb on + strand at 554.418 kb on - strand at 554.458 kb on + strand, within ABIE40_RS02810 at 554.495 kb on + strand, within ABIE40_RS02810 at 554.495 kb on + strand, within ABIE40_RS02810 at 554.495 kb on + strand, within ABIE40_RS02810 at 554.495 kb on + strand, within ABIE40_RS02810 at 554.496 kb on - strand, within ABIE40_RS02810 at 554.496 kb on - strand, within ABIE40_RS02810 at 554.508 kb on - strand, within ABIE40_RS02810 at 554.508 kb on - strand, within ABIE40_RS02810 at 554.543 kb on + strand, within ABIE40_RS02810 at 554.543 kb on + strand, within ABIE40_RS02810 at 554.544 kb on - strand, within ABIE40_RS02810 at 554.544 kb on - strand, within ABIE40_RS02810 at 554.544 kb on - strand, within ABIE40_RS02810 at 554.747 kb on + strand, within ABIE40_RS02810 at 554.747 kb on + strand, within ABIE40_RS02810 at 554.747 kb on + strand, within ABIE40_RS02810 at 554.748 kb on - strand, within ABIE40_RS02810
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 551,361 + ABIE40_RS02795 0.49 -0.2 551,361 + ABIE40_RS02795 0.49 +0.0 551,361 + ABIE40_RS02795 0.49 -0.6 551,361 + ABIE40_RS02795 0.49 +2.7 551,362 - ABIE40_RS02795 0.49 +0.8 551,362 - ABIE40_RS02795 0.49 -3.4 551,362 - ABIE40_RS02795 0.49 +0.4 551,362 - ABIE40_RS02795 0.49 -1.2 551,376 + ABIE40_RS02795 0.50 -0.4 551,376 + ABIE40_RS02795 0.50 -1.8 551,376 + ABIE40_RS02795 0.50 -0.9 551,376 + ABIE40_RS02795 0.50 -0.9 551,377 - ABIE40_RS02795 0.50 -0.6 551,395 + ABIE40_RS02795 0.51 -0.4 551,395 + ABIE40_RS02795 0.51 -2.5 551,396 - ABIE40_RS02795 0.51 +0.9 551,396 - ABIE40_RS02795 0.51 -1.1 551,396 - ABIE40_RS02795 0.51 -0.5 551,850 + ABIE40_RS02795 0.79 +0.7 551,979 + ABIE40_RS02795 0.87 +0.9 551,979 + ABIE40_RS02795 0.87 -3.1 551,980 - ABIE40_RS02795 0.87 -1.3 551,980 - ABIE40_RS02795 0.87 +1.7 552,037 + -0.3 552,054 + +1.8 552,104 + +1.7 552,105 - -0.7 552,105 - +1.9 552,105 - -0.8 552,105 - -1.2 552,105 - +0.2 552,133 - +0.3 552,164 + -0.1 552,164 + -1.0 552,164 + -2.7 552,165 - -2.4 552,165 - -1.1 552,165 - -1.3 552,165 - -1.8 552,174 - -2.1 552,176 + +0.7 552,177 - -0.0 552,177 - -0.7 552,177 - +0.6 552,177 - +4.5 552,177 - +0.1 552,184 + -0.8 552,184 + -1.2 552,184 + +0.3 552,185 - -0.3 552,185 - +0.3 552,229 + -0.9 552,229 + -0.4 552,230 - +0.4 552,315 + +0.3 552,315 + +0.5 552,315 + +0.5 552,315 + +0.9 552,315 + +0.8 552,315 + +2.5 552,315 + -1.0 552,315 + -0.5 552,316 - -1.2 552,316 - -0.2 552,316 - -0.1 552,316 - +0.0 552,317 + +0.0 552,317 + -1.3 552,317 + -1.1 552,317 + +0.1 552,317 + +0.2 552,317 + +0.7 552,317 + -0.1 552,318 - -1.6 552,318 - -0.6 552,318 - +0.7 552,391 + ABIE40_RS02800 0.13 +0.2 552,430 + ABIE40_RS02800 0.15 -1.5 552,430 + ABIE40_RS02800 0.15 -2.3 552,592 + ABIE40_RS02800 0.25 +0.2 552,592 + ABIE40_RS02800 0.25 -1.1 552,592 + ABIE40_RS02800 0.25 -0.5 552,593 - ABIE40_RS02800 0.25 +1.4 552,621 + ABIE40_RS02800 0.27 +0.1 553,008 - ABIE40_RS02800 0.51 -0.8 553,239 + ABIE40_RS02800 0.65 -0.5 553,240 - ABIE40_RS02800 0.65 +2.1 553,240 - ABIE40_RS02800 0.65 +0.1 553,240 - ABIE40_RS02800 0.65 -1.1 553,262 + ABIE40_RS02800 0.67 -0.1 553,262 + ABIE40_RS02800 0.67 +0.3 553,263 - ABIE40_RS02800 0.67 -1.5 553,491 - ABIE40_RS02800 0.81 -0.4 553,628 + ABIE40_RS02800 0.89 +0.4 553,628 + ABIE40_RS02800 0.89 +1.1 553,629 - ABIE40_RS02800 0.89 -0.4 553,629 - ABIE40_RS02800 0.89 -1.3 553,709 + -0.6 553,709 + -1.2 553,709 + -0.2 553,709 + -0.1 553,709 + -0.9 553,709 + +4.2 553,709 + -0.5 553,709 + -1.6 553,709 + -1.6 553,710 - -1.3 553,710 - +1.7 553,710 - -0.0 553,710 - +2.5 553,710 - +0.5 553,710 - -2.2 553,710 - -1.4 553,710 - +1.5 553,710 - -1.2 553,765 - -0.3 553,844 - +2.3 553,903 + ABIE40_RS02805 0.23 +0.0 553,903 + ABIE40_RS02805 0.23 +0.3 553,903 + ABIE40_RS02805 0.23 -0.2 553,903 + ABIE40_RS02805 0.23 -0.8 553,903 + ABIE40_RS02805 0.23 +0.4 553,903 + ABIE40_RS02805 0.23 +0.4 553,903 + ABIE40_RS02805 0.23 -0.4 553,903 + ABIE40_RS02805 0.23 +0.3 553,904 - ABIE40_RS02805 0.23 -0.7 553,904 - ABIE40_RS02805 0.23 +0.5 553,904 - ABIE40_RS02805 0.23 +1.9 553,904 - ABIE40_RS02805 0.23 -0.3 553,904 - ABIE40_RS02805 0.23 -0.5 553,907 + ABIE40_RS02805 0.24 +0.3 553,907 + ABIE40_RS02805 0.24 -1.5 553,907 + ABIE40_RS02805 0.24 -0.2 553,908 - ABIE40_RS02805 0.24 -1.1 553,924 + ABIE40_RS02805 0.28 +0.1 553,924 + ABIE40_RS02805 0.28 +0.4 553,924 + ABIE40_RS02805 0.28 -1.1 553,925 - ABIE40_RS02805 0.28 -0.8 553,925 - ABIE40_RS02805 0.28 +0.2 554,056 - ABIE40_RS02805 0.59 -0.7 554,259 + +1.3 554,264 + +1.9 554,264 + +0.7 554,264 + +2.4 554,265 - +0.5 554,417 + +0.8 554,417 + +0.3 554,417 + -0.8 554,418 - +1.4 554,458 + ABIE40_RS02810 0.11 +0.4 554,495 + ABIE40_RS02810 0.13 +0.5 554,495 + ABIE40_RS02810 0.13 +2.2 554,495 + ABIE40_RS02810 0.13 +1.9 554,495 + ABIE40_RS02810 0.13 -0.3 554,496 - ABIE40_RS02810 0.13 +0.9 554,496 - ABIE40_RS02810 0.13 +0.7 554,508 - ABIE40_RS02810 0.14 -0.1 554,508 - ABIE40_RS02810 0.14 +0.4 554,543 + ABIE40_RS02810 0.15 +2.2 554,543 + ABIE40_RS02810 0.15 +3.5 554,544 - ABIE40_RS02810 0.15 +1.1 554,544 - ABIE40_RS02810 0.15 +2.8 554,544 - ABIE40_RS02810 0.15 +1.6 554,747 + ABIE40_RS02810 0.25 +1.9 554,747 + ABIE40_RS02810 0.25 +1.9 554,747 + ABIE40_RS02810 0.25 +0.7 554,748 - ABIE40_RS02810 0.25 +0.2
Or see this region's nucleotide sequence