Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29505

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS29500 and ABID97_RS29505 overlap by 4 nucleotidesABID97_RS29505 and ABID97_RS29510 are separated by 26 nucleotides ABID97_RS29500: ABID97_RS29500 - fumarylacetoacetase, at 823,308 to 824,633 _RS29500 ABID97_RS29505: ABID97_RS29505 - SDR family oxidoreductase, at 824,630 to 825,397 _RS29505 ABID97_RS29510: ABID97_RS29510 - aldehyde dehydrogenase family protein, at 825,424 to 825,893 _RS29510 Position (kb) 824 825 826Strain fitness (log2 ratio) -1 0 1at 823.981 kb on + strand, within ABID97_RS29500at 823.981 kb on + strand, within ABID97_RS29500at 823.982 kb on - strand, within ABID97_RS29500at 824.119 kb on + strand, within ABID97_RS29500at 824.119 kb on + strand, within ABID97_RS29500at 824.120 kb on - strand, within ABID97_RS29500at 824.120 kb on - strand, within ABID97_RS29500at 824.904 kb on + strand, within ABID97_RS29505at 825.135 kb on + strand, within ABID97_RS29505at 825.776 kb on + strand, within ABID97_RS29510at 825.777 kb on - strand, within ABID97_RS29510at 825.777 kb on - strand, within ABID97_RS29510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
823,981 + ABID97_RS29500 0.51 +0.3
823,981 + ABID97_RS29500 0.51 -0.3
823,982 - ABID97_RS29500 0.51 -0.1
824,119 + ABID97_RS29500 0.61 +0.8
824,119 + ABID97_RS29500 0.61 -0.0
824,120 - ABID97_RS29500 0.61 +0.7
824,120 - ABID97_RS29500 0.61 +0.6
824,904 + ABID97_RS29505 0.36 -0.9
825,135 + ABID97_RS29505 0.66 -0.4
825,776 + ABID97_RS29510 0.75 +0.3
825,777 - ABID97_RS29510 0.75 -0.0
825,777 - ABID97_RS29510 0.75 +0.7

Or see this region's nucleotide sequence