Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28825 and ABID97_RS28830 are separated by 162 nucleotides ABID97_RS28830 and ABID97_RS28835 are separated by 86 nucleotides ABID97_RS28835 and ABID97_RS28840 overlap by 4 nucleotides
ABID97_RS28825: ABID97_RS28825 - 3-hydroxyacyl-CoA dehydrogenase, at 682,364 to 683,329
_RS28825
ABID97_RS28830: ABID97_RS28830 - GntR family transcriptional regulator, at 683,492 to 684,271
_RS28830
ABID97_RS28835: ABID97_RS28835 - cytochrome c family protein, at 684,358 to 684,753
_RS28835
ABID97_RS28840: ABID97_RS28840 - ferritin-like domain-containing protein, at 684,750 to 685,319
_RS28840
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1 at 682.564 kb on - strand, within ABID97_RS28825 at 682.792 kb on - strand, within ABID97_RS28825 at 682.792 kb on - strand, within ABID97_RS28825 at 682.792 kb on - strand, within ABID97_RS28825 at 682.867 kb on - strand, within ABID97_RS28825 at 683.170 kb on - strand, within ABID97_RS28825 at 683.170 kb on - strand, within ABID97_RS28825 at 683.549 kb on + strand at 683.549 kb on + strand at 683.549 kb on + strand at 683.933 kb on + strand, within ABID97_RS28830 at 683.934 kb on - strand, within ABID97_RS28830 at 683.934 kb on - strand, within ABID97_RS28830 at 684.456 kb on - strand, within ABID97_RS28835 at 684.456 kb on - strand, within ABID97_RS28835 at 684.557 kb on + strand, within ABID97_RS28835 at 684.558 kb on - strand, within ABID97_RS28835 at 684.659 kb on + strand, within ABID97_RS28835 at 684.660 kb on - strand, within ABID97_RS28835 at 684.890 kb on - strand, within ABID97_RS28840 at 685.121 kb on - strand, within ABID97_RS28840
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 682,564 - ABID97_RS28825 0.21 -0.5 682,792 - ABID97_RS28825 0.44 +0.5 682,792 - ABID97_RS28825 0.44 -0.6 682,792 - ABID97_RS28825 0.44 +0.1 682,867 - ABID97_RS28825 0.52 -1.2 683,170 - ABID97_RS28825 0.83 -0.0 683,170 - ABID97_RS28825 0.83 -1.0 683,549 + -1.5 683,549 + +1.1 683,549 + +1.0 683,933 + ABID97_RS28830 0.57 +0.7 683,934 - ABID97_RS28830 0.57 +1.7 683,934 - ABID97_RS28830 0.57 +0.7 684,456 - ABID97_RS28835 0.25 -0.2 684,456 - ABID97_RS28835 0.25 +0.3 684,557 + ABID97_RS28835 0.50 -0.3 684,558 - ABID97_RS28835 0.51 -0.0 684,659 + ABID97_RS28835 0.76 -0.3 684,660 - ABID97_RS28835 0.76 +0.7 684,890 - ABID97_RS28840 0.25 -1.9 685,121 - ABID97_RS28840 0.65 -1.3
Or see this region's nucleotide sequence