Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28765

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28760 and ABID97_RS28765 are separated by 24 nucleotidesABID97_RS28765 and ABID97_RS28770 are separated by 1 nucleotidesABID97_RS28770 and ABID97_RS28775 overlap by 17 nucleotides ABID97_RS28760: ABID97_RS28760 - aldehyde dehydrogenase family protein, at 669,502 to 670,947 _RS28760 ABID97_RS28765: ABID97_RS28765 - SDR family NAD(P)-dependent oxidoreductase, at 670,972 to 671,751 _RS28765 ABID97_RS28770: ABID97_RS28770 - ABC transporter ATP-binding protein, at 671,753 to 672,457 _RS28770 ABID97_RS28775: ABID97_RS28775 - branched-chain amino acid ABC transporter ATP-binding protein/permease, at 672,441 to 674,231 _RS28775 Position (kb) 670 671 672Strain fitness (log2 ratio) -1 0 1at 670.923 kb on - strandat 671.279 kb on + strand, within ABID97_RS28765at 672.153 kb on + strand, within ABID97_RS28770at 672.153 kb on + strand, within ABID97_RS28770at 672.153 kb on + strand, within ABID97_RS28770at 672.474 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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670,923 - -1.2
671,279 + ABID97_RS28765 0.39 +1.6
672,153 + ABID97_RS28770 0.57 +0.4
672,153 + ABID97_RS28770 0.57 -0.2
672,153 + ABID97_RS28770 0.57 -0.4
672,474 + +0.0

Or see this region's nucleotide sequence