Strain Fitness in Variovorax sp. OAS795 around ABID97_RS28495

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS28485 and ABID97_RS28490 overlap by 4 nucleotidesABID97_RS28490 and ABID97_RS28495 overlap by 4 nucleotidesABID97_RS28495 and ABID97_RS28500 overlap by 1 nucleotidesABID97_RS28500 and ABID97_RS28505 are separated by 10 nucleotides ABID97_RS28485: ABID97_RS28485 - FAD-dependent monooxygenase, at 616,871 to 618,091 _RS28485 ABID97_RS28490: ABID97_RS28490 - (2Fe-2S)-binding protein, at 618,088 to 618,600 _RS28490 ABID97_RS28495: ABID97_RS28495 - FAD binding domain-containing protein, at 618,597 to 619,460 _RS28495 ABID97_RS28500: ABID97_RS28500 - SRPBCC domain-containing protein, at 619,460 to 620,287 _RS28500 ABID97_RS28505: ABID97_RS28505 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 620,298 to 622,598 _RS28505 Position (kb) 618 619 620Strain fitness (log2 ratio) -1 0 1at 618.165 kb on + strand, within ABID97_RS28490at 618.558 kb on + strandat 618.559 kb on - strandat 618.559 kb on - strandat 618.954 kb on + strand, within ABID97_RS28495at 619.555 kb on - strand, within ABID97_RS28500at 619.785 kb on - strand, within ABID97_RS28500at 620.039 kb on - strand, within ABID97_RS28500at 620.093 kb on + strand, within ABID97_RS28500at 620.094 kb on - strand, within ABID97_RS28500at 620.094 kb on - strand, within ABID97_RS28500at 620.094 kb on - strand, within ABID97_RS28500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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618,165 + ABID97_RS28490 0.15 -0.2
618,558 + -0.9
618,559 - -0.3
618,559 - +0.3
618,954 + ABID97_RS28495 0.41 -1.2
619,555 - ABID97_RS28500 0.11 -0.3
619,785 - ABID97_RS28500 0.39 +0.1
620,039 - ABID97_RS28500 0.70 +0.0
620,093 + ABID97_RS28500 0.76 +0.3
620,094 - ABID97_RS28500 0.77 -0.3
620,094 - ABID97_RS28500 0.77 +0.2
620,094 - ABID97_RS28500 0.77 -0.6

Or see this region's nucleotide sequence