Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27555

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27545 and ABID97_RS27550 are separated by 50 nucleotidesABID97_RS27550 and ABID97_RS27555 are separated by 297 nucleotidesABID97_RS27555 and ABID97_RS27560 are separated by 257 nucleotides ABID97_RS27545: ABID97_RS27545 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 425,413 to 427,435 _RS27545 ABID97_RS27550: ABID97_RS27550 - nuclear transport factor 2 family protein, at 427,486 to 427,926 _RS27550 ABID97_RS27555: ABID97_RS27555 - enoyl-CoA hydratase-related protein, at 428,224 to 429,048 _RS27555 ABID97_RS27560: ABID97_RS27560 - ISNCY family transposase, at 429,306 to 430,721 _RS27560 Position (kb) 428 429 430Strain fitness (log2 ratio) -1 0 1at 428.049 kb on - strandat 428.637 kb on - strand, within ABID97_RS27555at 428.721 kb on + strand, within ABID97_RS27555

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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428,049 - +0.1
428,637 - ABID97_RS27555 0.50 +0.1
428,721 + ABID97_RS27555 0.60 +1.1

Or see this region's nucleotide sequence