Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27485 and ABID97_RS27490 are separated by 46 nucleotides ABID97_RS27490 and ABID97_RS27495 are separated by 29 nucleotides ABID97_RS27495 and ABID97_RS27500 are separated by 65 nucleotides
ABID97_RS27485: ABID97_RS27485 - type II toxin-antitoxin system RelE/ParE family toxin, at 413,895 to 414,191
_RS27485
ABID97_RS27490: ABID97_RS27490 - enoyl-CoA hydratase/isomerase family protein, at 414,238 to 415,029
_RS27490
ABID97_RS27495: ABID97_RS27495 - tripartite tricarboxylate transporter substrate binding protein, at 415,059 to 416,042
_RS27495
ABID97_RS27500: ABID97_RS27500 - AMP-binding protein, at 416,108 to 417,685
_RS27500
Position (kb) 415
416
417 Strain fitness (log2 ratio) -1
0
1 at 414.240 kb on - strand at 414.761 kb on + strand, within ABID97_RS27490 at 414.762 kb on - strand, within ABID97_RS27490 at 414.762 kb on - strand, within ABID97_RS27490 at 414.762 kb on - strand, within ABID97_RS27490 at 414.762 kb on - strand, within ABID97_RS27490 at 415.274 kb on - strand, within ABID97_RS27495 at 415.565 kb on - strand, within ABID97_RS27495 at 416.251 kb on - strand at 416.251 kb on - strand at 416.673 kb on + strand, within ABID97_RS27500
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 414,240 - +0.7 414,761 + ABID97_RS27490 0.66 +0.2 414,762 - ABID97_RS27490 0.66 -0.4 414,762 - ABID97_RS27490 0.66 +0.1 414,762 - ABID97_RS27490 0.66 -0.3 414,762 - ABID97_RS27490 0.66 -0.1 415,274 - ABID97_RS27495 0.22 +1.1 415,565 - ABID97_RS27495 0.51 +0.6 416,251 - +0.1 416,251 - +0.9 416,673 + ABID97_RS27500 0.36 +0.7
Or see this region's nucleotide sequence