Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26885

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS26880 and ABID97_RS26885 are separated by 56 nucleotidesABID97_RS26885 and ABID97_RS26890 are separated by 26 nucleotides ABID97_RS26880: ABID97_RS26880 - tripartite tricarboxylate transporter substrate binding protein, at 299,235 to 300,212 _RS26880 ABID97_RS26885: ABID97_RS26885 - tripartite tricarboxylate transporter substrate binding protein, at 300,269 to 301,240 _RS26885 ABID97_RS26890: ABID97_RS26890 - 2-hydroxyacid dehydrogenase, at 301,267 to 302,220 _RS26890 Position (kb) 300 301 302Strain fitness (log2 ratio) -1 0 1at 299.364 kb on + strand, within ABID97_RS26880at 299.815 kb on + strand, within ABID97_RS26880at 299.945 kb on - strand, within ABID97_RS26880at 300.243 kb on - strandat 300.777 kb on + strand, within ABID97_RS26885at 300.778 kb on - strand, within ABID97_RS26885at 300.930 kb on + strand, within ABID97_RS26885at 300.930 kb on + strand, within ABID97_RS26885at 300.931 kb on - strand, within ABID97_RS26885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
299,364 + ABID97_RS26880 0.13 -0.2
299,815 + ABID97_RS26880 0.59 +1.2
299,945 - ABID97_RS26880 0.73 -0.8
300,243 - +1.1
300,777 + ABID97_RS26885 0.52 -0.4
300,778 - ABID97_RS26885 0.52 +1.2
300,930 + ABID97_RS26885 0.68 +0.2
300,930 + ABID97_RS26885 0.68 -1.3
300,931 - ABID97_RS26885 0.68 -1.2

Or see this region's nucleotide sequence