Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26625 and ABID97_RS26630 are separated by 48 nucleotides ABID97_RS26630 and ABID97_RS26635 are separated by 72 nucleotides
ABID97_RS26625: ABID97_RS26625 - Bug family tripartite tricarboxylate transporter substrate binding protein, at 249,850 to 250,827
_RS26625
ABID97_RS26630: ABID97_RS26630 - aspartate aminotransferase family protein, at 250,876 to 252,285
_RS26630
ABID97_RS26635: ABID97_RS26635 - LysR family transcriptional regulator, at 252,358 to 253,275
_RS26635
Position (kb) 250
251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 250.358 kb on + strand, within ABID97_RS26625 at 251.258 kb on - strand, within ABID97_RS26630 at 251.258 kb on - strand, within ABID97_RS26630 at 251.312 kb on + strand, within ABID97_RS26630 at 251.316 kb on + strand, within ABID97_RS26630 at 251.317 kb on - strand, within ABID97_RS26630 at 251.826 kb on - strand, within ABID97_RS26630 at 252.368 kb on + strand at 252.369 kb on - strand at 252.369 kb on - strand at 252.949 kb on + strand, within ABID97_RS26635 at 253.046 kb on - strand, within ABID97_RS26635 at 253.192 kb on + strand at 253.192 kb on + strand at 253.192 kb on + strand at 253.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 250,358 + ABID97_RS26625 0.52 +1.1 251,258 - ABID97_RS26630 0.27 +0.1 251,258 - ABID97_RS26630 0.27 -0.7 251,312 + ABID97_RS26630 0.31 +0.7 251,316 + ABID97_RS26630 0.31 -0.2 251,317 - ABID97_RS26630 0.31 -0.3 251,826 - ABID97_RS26630 0.67 -0.3 252,368 + -0.0 252,369 - +0.2 252,369 - -0.4 252,949 + ABID97_RS26635 0.64 -0.2 253,046 - ABID97_RS26635 0.75 -0.0 253,192 + +1.0 253,192 + -0.9 253,192 + -1.8 253,193 - -0.0
Or see this region's nucleotide sequence