Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26005

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS26000 and ABID97_RS26005 are separated by 24 nucleotidesABID97_RS26005 and ABID97_RS26010 are separated by 45 nucleotides ABID97_RS26000: ABID97_RS26000 - quinone oxidoreductase, at 124,245 to 125,228 _RS26000 ABID97_RS26005: ABID97_RS26005 - SDR family NAD(P)-dependent oxidoreductase, at 125,253 to 126,002 _RS26005 ABID97_RS26010: ABID97_RS26010 - ABC transporter substrate-binding protein, at 126,048 to 127,208 _RS26010 Position (kb) 125 126 127Strain fitness (log2 ratio) -1 0 1at 124.375 kb on - strand, within ABID97_RS26000at 124.513 kb on - strand, within ABID97_RS26000at 124.513 kb on - strand, within ABID97_RS26000at 124.709 kb on - strand, within ABID97_RS26000at 124.709 kb on - strand, within ABID97_RS26000at 125.257 kb on + strandat 125.276 kb on - strandat 126.396 kb on + strand, within ABID97_RS26010at 126.397 kb on - strand, within ABID97_RS26010at 126.924 kb on + strand, within ABID97_RS26010

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
124,375 - ABID97_RS26000 0.13 -0.8
124,513 - ABID97_RS26000 0.27 +0.6
124,513 - ABID97_RS26000 0.27 +0.4
124,709 - ABID97_RS26000 0.47 -0.8
124,709 - ABID97_RS26000 0.47 -0.1
125,257 + -0.5
125,276 - -0.7
126,396 + ABID97_RS26010 0.30 -0.4
126,397 - ABID97_RS26010 0.30 -0.7
126,924 + ABID97_RS26010 0.75 -1.7

Or see this region's nucleotide sequence