Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25930

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25925 and ABID97_RS25930 are separated by 151 nucleotidesABID97_RS25930 and ABID97_RS25935 are separated by 72 nucleotidesABID97_RS25935 and ABID97_RS25940 are separated by 66 nucleotides ABID97_RS25925: ABID97_RS25925 - glyoxylate/hydroxypyruvate reductase A, at 108,398 to 109,336 _RS25925 ABID97_RS25930: ABID97_RS25930 - aspartate aminotransferase family protein, at 109,488 to 110,891 _RS25930 ABID97_RS25935: ABID97_RS25935 - Lrp/AsnC family transcriptional regulator, at 110,964 to 111,458 _RS25935 ABID97_RS25940: ABID97_RS25940 - LysR substrate-binding domain-containing protein, at 111,525 to 112,448 _RS25940 Position (kb) 109 110 111Strain fitness (log2 ratio) -1 0 1at 108.701 kb on + strand, within ABID97_RS25925at 108.746 kb on + strand, within ABID97_RS25925at 109.840 kb on - strand, within ABID97_RS25930at 109.899 kb on + strand, within ABID97_RS25930at 110.041 kb on - strand, within ABID97_RS25930at 110.377 kb on - strand, within ABID97_RS25930at 110.473 kb on - strand, within ABID97_RS25930at 111.117 kb on + strand, within ABID97_RS25935at 111.292 kb on - strand, within ABID97_RS25935at 111.292 kb on - strand, within ABID97_RS25935at 111.388 kb on - strand, within ABID97_RS25935at 111.511 kb on + strandat 111.512 kb on - strandat 111.732 kb on + strand, within ABID97_RS25940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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108,701 + ABID97_RS25925 0.32 -0.7
108,746 + ABID97_RS25925 0.37 -0.8
109,840 - ABID97_RS25930 0.25 +1.1
109,899 + ABID97_RS25930 0.29 +0.2
110,041 - ABID97_RS25930 0.39 +0.2
110,377 - ABID97_RS25930 0.63 -1.0
110,473 - ABID97_RS25930 0.70 +0.1
111,117 + ABID97_RS25935 0.31 -1.0
111,292 - ABID97_RS25935 0.66 -1.7
111,292 - ABID97_RS25935 0.66 -0.0
111,388 - ABID97_RS25935 0.86 -0.8
111,511 + -0.8
111,512 - -0.8
111,732 + ABID97_RS25940 0.22 -0.0

Or see this region's nucleotide sequence