Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25855 and ABID97_RS25860 are separated by 167 nucleotides ABID97_RS25860 and ABID97_RS25865 overlap by 13 nucleotides ABID97_RS25865 and ABID97_RS25870 are separated by 1 nucleotides
ABID97_RS25855: ABID97_RS25855 - dihydrodipicolinate synthase family protein, at 91,316 to 92,236
_RS25855
ABID97_RS25860: ABID97_RS25860 - LysR family transcriptional regulator, at 92,404 to 93,282
_RS25860
ABID97_RS25865: ABID97_RS25865 - amidohydrolase family protein, at 93,270 to 94,166
_RS25865
ABID97_RS25870: ABID97_RS25870 - IlvD/Edd family dehydratase, at 94,168 to 95,922
_RS25870
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2 at 91.821 kb on + strand, within ABID97_RS25855 at 91.873 kb on - strand, within ABID97_RS25855 at 92.737 kb on + strand, within ABID97_RS25860 at 92.738 kb on - strand, within ABID97_RS25860 at 93.266 kb on - strand at 93.266 kb on - strand at 93.451 kb on + strand, within ABID97_RS25865 at 93.452 kb on - strand, within ABID97_RS25865 at 93.511 kb on + strand, within ABID97_RS25865 at 93.533 kb on - strand, within ABID97_RS25865 at 93.839 kb on + strand, within ABID97_RS25865 at 94.042 kb on + strand, within ABID97_RS25865
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 91,821 + ABID97_RS25855 0.55 -0.1 91,873 - ABID97_RS25855 0.60 -0.1 92,737 + ABID97_RS25860 0.38 +0.7 92,738 - ABID97_RS25860 0.38 +1.0 93,266 - +0.1 93,266 - +1.9 93,451 + ABID97_RS25865 0.20 +0.1 93,452 - ABID97_RS25865 0.20 -0.6 93,511 + ABID97_RS25865 0.27 -0.2 93,533 - ABID97_RS25865 0.29 -2.2 93,839 + ABID97_RS25865 0.63 +1.7 94,042 + ABID97_RS25865 0.86 -0.4
Or see this region's nucleotide sequence