Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25830

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25820 and ABID97_RS25825 are separated by 175 nucleotidesABID97_RS25825 and ABID97_RS25830 are separated by 2 nucleotidesABID97_RS25830 and ABID97_RS25835 overlap by 4 nucleotides ABID97_RS25820: ABID97_RS25820 - tripartite tricarboxylate transporter permease, at 84,023 to 85,537 _RS25820 ABID97_RS25825: ABID97_RS25825 - HHHH-motif protein, at 85,713 to 85,886 _RS25825 ABID97_RS25830: ABID97_RS25830 - Gfo/Idh/MocA family oxidoreductase, at 85,889 to 86,878 _RS25830 ABID97_RS25835: ABID97_RS25835 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 86,875 to 87,993 _RS25835 Position (kb) 85 86 87Strain fitness (log2 ratio) -1 0 1at 84.999 kb on + strand, within ABID97_RS25820at 85.301 kb on + strand, within ABID97_RS25820at 85.302 kb on - strand, within ABID97_RS25820at 85.302 kb on - strand, within ABID97_RS25820at 86.007 kb on + strand, within ABID97_RS25830at 86.019 kb on + strand, within ABID97_RS25830at 86.319 kb on - strand, within ABID97_RS25830at 87.422 kb on + strand, within ABID97_RS25835at 87.422 kb on - strand, within ABID97_RS25835at 87.423 kb on - strand, within ABID97_RS25835

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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84,999 + ABID97_RS25820 0.64 -1.3
85,301 + ABID97_RS25820 0.84 +0.2
85,302 - ABID97_RS25820 0.84 +0.7
85,302 - ABID97_RS25820 0.84 -1.0
86,007 + ABID97_RS25830 0.12 +1.3
86,019 + ABID97_RS25830 0.13 -0.3
86,319 - ABID97_RS25830 0.43 +0.5
87,422 + ABID97_RS25835 0.49 -0.0
87,422 - ABID97_RS25835 0.49 +0.3
87,423 - ABID97_RS25835 0.49 -0.2

Or see this region's nucleotide sequence