Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25650

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25645 and ABID97_RS25650 are separated by 20 nucleotidesABID97_RS25650 and ABID97_RS25655 are separated by 41 nucleotides ABID97_RS25645: ABID97_RS25645 - L-arabinonate dehydratase, at 47,816 to 49,543 _RS25645 ABID97_RS25650: ABID97_RS25650 - ribonuclease activity regulator RraA, at 49,564 to 50,274 _RS25650 ABID97_RS25655: ABID97_RS25655 - tripartite tricarboxylate transporter substrate binding protein, at 50,316 to 51,311 _RS25655 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1at 48.761 kb on + strand, within ABID97_RS25645at 48.761 kb on + strand, within ABID97_RS25645at 48.782 kb on + strand, within ABID97_RS25645at 48.782 kb on + strand, within ABID97_RS25645at 48.782 kb on + strand, within ABID97_RS25645at 48.932 kb on + strand, within ABID97_RS25645at 49.720 kb on + strand, within ABID97_RS25650at 49.966 kb on + strand, within ABID97_RS25650at 49.967 kb on - strand, within ABID97_RS25650at 50.433 kb on + strand, within ABID97_RS25655at 50.434 kb on - strand, within ABID97_RS25655at 50.434 kb on - strand, within ABID97_RS25655at 50.434 kb on - strand, within ABID97_RS25655at 50.569 kb on - strand, within ABID97_RS25655at 50.595 kb on + strand, within ABID97_RS25655at 50.596 kb on - strand, within ABID97_RS25655at 50.596 kb on - strand, within ABID97_RS25655at 50.646 kb on + strand, within ABID97_RS25655at 50.662 kb on - strand, within ABID97_RS25655at 50.886 kb on + strand, within ABID97_RS25655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
48,761 + ABID97_RS25645 0.55 -0.6
48,761 + ABID97_RS25645 0.55 -0.2
48,782 + ABID97_RS25645 0.56 -0.4
48,782 + ABID97_RS25645 0.56 -0.4
48,782 + ABID97_RS25645 0.56 -1.2
48,932 + ABID97_RS25645 0.65 -0.7
49,720 + ABID97_RS25650 0.22 +1.1
49,966 + ABID97_RS25650 0.57 -0.5
49,967 - ABID97_RS25650 0.57 +0.3
50,433 + ABID97_RS25655 0.12 -0.9
50,434 - ABID97_RS25655 0.12 -0.0
50,434 - ABID97_RS25655 0.12 -0.3
50,434 - ABID97_RS25655 0.12 +0.3
50,569 - ABID97_RS25655 0.25 +0.1
50,595 + ABID97_RS25655 0.28 +0.7
50,596 - ABID97_RS25655 0.28 -0.3
50,596 - ABID97_RS25655 0.28 -0.0
50,646 + ABID97_RS25655 0.33 +0.1
50,662 - ABID97_RS25655 0.35 -0.2
50,886 + ABID97_RS25655 0.57 +0.7

Or see this region's nucleotide sequence