Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25130 and ABID97_RS25135 overlap by 4 nucleotides ABID97_RS25135 and ABID97_RS25140 are separated by 160 nucleotides
ABID97_RS25130: ABID97_RS25130 - carboxyl transferase domain-containing protein, at 5,204,997 to 5,206,622
_RS25130
ABID97_RS25135: ABID97_RS25135 - AMP-binding protein, at 5,206,619 to 5,208,289
_RS25135
ABID97_RS25140: ABID97_RS25140 - isovaleryl-CoA dehydrogenase, at 5,208,450 to 5,209,622
_RS25140
Position (kb) 5206
5207
5208
5209 Strain fitness (log2 ratio) -2
-1
0
1 at 5205.737 kb on - strand, within ABID97_RS25130 at 5206.027 kb on + strand, within ABID97_RS25130 at 5206.028 kb on - strand, within ABID97_RS25130 at 5206.028 kb on - strand, within ABID97_RS25130 at 5206.105 kb on + strand, within ABID97_RS25130 at 5206.186 kb on + strand, within ABID97_RS25130 at 5206.186 kb on + strand, within ABID97_RS25130 at 5206.187 kb on - strand, within ABID97_RS25130 at 5206.187 kb on - strand, within ABID97_RS25130 at 5206.259 kb on - strand, within ABID97_RS25130 at 5206.259 kb on - strand, within ABID97_RS25130 at 5206.259 kb on - strand, within ABID97_RS25130 at 5206.378 kb on + strand, within ABID97_RS25130 at 5206.378 kb on + strand, within ABID97_RS25130 at 5206.515 kb on + strand at 5206.515 kb on + strand at 5206.535 kb on - strand at 5206.535 kb on - strand at 5206.731 kb on + strand at 5206.732 kb on - strand at 5206.732 kb on - strand at 5206.746 kb on + strand at 5206.747 kb on - strand at 5206.747 kb on - strand at 5206.779 kb on - strand at 5206.779 kb on - strand at 5206.843 kb on - strand, within ABID97_RS25135 at 5206.896 kb on + strand, within ABID97_RS25135 at 5206.923 kb on + strand, within ABID97_RS25135 at 5206.924 kb on - strand, within ABID97_RS25135 at 5206.980 kb on + strand, within ABID97_RS25135 at 5206.980 kb on + strand, within ABID97_RS25135 at 5207.557 kb on - strand, within ABID97_RS25135 at 5208.144 kb on + strand at 5208.572 kb on - strand, within ABID97_RS25140 at 5208.709 kb on + strand, within ABID97_RS25140 at 5208.710 kb on - strand, within ABID97_RS25140 at 5208.715 kb on + strand, within ABID97_RS25140 at 5208.715 kb on + strand, within ABID97_RS25140 at 5208.715 kb on + strand, within ABID97_RS25140 at 5208.715 kb on + strand, within ABID97_RS25140 at 5208.716 kb on - strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.742 kb on + strand, within ABID97_RS25140 at 5208.743 kb on - strand, within ABID97_RS25140 at 5208.743 kb on - strand, within ABID97_RS25140 at 5208.743 kb on - strand, within ABID97_RS25140 at 5208.979 kb on + strand, within ABID97_RS25140 at 5208.979 kb on + strand, within ABID97_RS25140 at 5208.980 kb on - strand, within ABID97_RS25140 at 5209.102 kb on + strand, within ABID97_RS25140 at 5209.102 kb on + strand, within ABID97_RS25140 at 5209.102 kb on + strand, within ABID97_RS25140 at 5209.103 kb on - strand, within ABID97_RS25140 at 5209.165 kb on + strand, within ABID97_RS25140 at 5209.168 kb on + strand, within ABID97_RS25140 at 5209.168 kb on + strand, within ABID97_RS25140 at 5209.169 kb on - strand, within ABID97_RS25140 at 5209.279 kb on + strand, within ABID97_RS25140 at 5209.279 kb on + strand, within ABID97_RS25140 at 5209.280 kb on - strand, within ABID97_RS25140 at 5209.280 kb on - strand, within ABID97_RS25140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 5,205,737 - ABID97_RS25130 0.46 +0.1 5,206,027 + ABID97_RS25130 0.63 -0.9 5,206,028 - ABID97_RS25130 0.63 -1.1 5,206,028 - ABID97_RS25130 0.63 +0.3 5,206,105 + ABID97_RS25130 0.68 -0.1 5,206,186 + ABID97_RS25130 0.73 -0.0 5,206,186 + ABID97_RS25130 0.73 +0.2 5,206,187 - ABID97_RS25130 0.73 +0.1 5,206,187 - ABID97_RS25130 0.73 +0.7 5,206,259 - ABID97_RS25130 0.78 -0.4 5,206,259 - ABID97_RS25130 0.78 -1.9 5,206,259 - ABID97_RS25130 0.78 -0.4 5,206,378 + ABID97_RS25130 0.85 -0.3 5,206,378 + ABID97_RS25130 0.85 -1.6 5,206,515 + -0.5 5,206,515 + -1.0 5,206,535 - -1.4 5,206,535 - -1.1 5,206,731 + +1.0 5,206,732 - -0.5 5,206,732 - -0.1 5,206,746 + -0.3 5,206,747 - +0.1 5,206,747 - +0.3 5,206,779 - -0.2 5,206,779 - -0.9 5,206,843 - ABID97_RS25135 0.13 +0.7 5,206,896 + ABID97_RS25135 0.17 -1.0 5,206,923 + ABID97_RS25135 0.18 -0.4 5,206,924 - ABID97_RS25135 0.18 -0.4 5,206,980 + ABID97_RS25135 0.22 -1.2 5,206,980 + ABID97_RS25135 0.22 +0.4 5,207,557 - ABID97_RS25135 0.56 +0.2 5,208,144 + -0.2 5,208,572 - ABID97_RS25140 0.10 +0.9 5,208,709 + ABID97_RS25140 0.22 -0.6 5,208,710 - ABID97_RS25140 0.22 +0.0 5,208,715 + ABID97_RS25140 0.23 -0.2 5,208,715 + ABID97_RS25140 0.23 -1.2 5,208,715 + ABID97_RS25140 0.23 +0.4 5,208,715 + ABID97_RS25140 0.23 +1.5 5,208,716 - ABID97_RS25140 0.23 -1.5 5,208,742 + ABID97_RS25140 0.25 -0.2 5,208,742 + ABID97_RS25140 0.25 +0.3 5,208,742 + ABID97_RS25140 0.25 -0.6 5,208,742 + ABID97_RS25140 0.25 +0.2 5,208,742 + ABID97_RS25140 0.25 +0.5 5,208,742 + ABID97_RS25140 0.25 -0.3 5,208,742 + ABID97_RS25140 0.25 -1.7 5,208,743 - ABID97_RS25140 0.25 -1.0 5,208,743 - ABID97_RS25140 0.25 -0.4 5,208,743 - ABID97_RS25140 0.25 -0.5 5,208,979 + ABID97_RS25140 0.45 -0.2 5,208,979 + ABID97_RS25140 0.45 -0.3 5,208,980 - ABID97_RS25140 0.45 +0.7 5,209,102 + ABID97_RS25140 0.56 -0.8 5,209,102 + ABID97_RS25140 0.56 +0.4 5,209,102 + ABID97_RS25140 0.56 -0.7 5,209,103 - ABID97_RS25140 0.56 +0.1 5,209,165 + ABID97_RS25140 0.61 +0.7 5,209,168 + ABID97_RS25140 0.61 -0.1 5,209,168 + ABID97_RS25140 0.61 -0.5 5,209,169 - ABID97_RS25140 0.61 -0.2 5,209,279 + ABID97_RS25140 0.71 +1.0 5,209,279 + ABID97_RS25140 0.71 -0.4 5,209,280 - ABID97_RS25140 0.71 -0.2 5,209,280 - ABID97_RS25140 0.71 -0.0
Or see this region's nucleotide sequence