Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22735 and ABID97_RS22740 are separated by 107 nucleotides ABID97_RS22740 and ABID97_RS22745 overlap by 4 nucleotides
ABID97_RS22735: ABID97_RS22735 - MoxR family ATPase, at 4,709,384 to 4,710,397
_RS22735
ABID97_RS22740: ABID97_RS22740 - DUF58 domain-containing protein, at 4,710,505 to 4,711,494
_RS22740
ABID97_RS22745: ABID97_RS22745 - VWA domain-containing protein, at 4,711,491 to 4,712,528
_RS22745
Position (kb) 4710
4711
4712 Strain fitness (log2 ratio) -1
0
1 at 4709.660 kb on + strand, within ABID97_RS22735 at 4709.661 kb on - strand, within ABID97_RS22735 at 4709.877 kb on - strand, within ABID97_RS22735 at 4709.877 kb on - strand, within ABID97_RS22735 at 4709.931 kb on - strand, within ABID97_RS22735 at 4710.051 kb on - strand, within ABID97_RS22735 at 4710.074 kb on + strand, within ABID97_RS22735 at 4710.504 kb on + strand at 4710.522 kb on + strand at 4710.523 kb on - strand at 4710.695 kb on - strand, within ABID97_RS22740 at 4710.932 kb on - strand, within ABID97_RS22740 at 4711.513 kb on + strand at 4711.554 kb on + strand at 4711.554 kb on + strand at 4711.554 kb on + strand at 4711.555 kb on - strand at 4712.137 kb on - strand, within ABID97_RS22745 at 4712.238 kb on + strand, within ABID97_RS22745 at 4712.238 kb on + strand, within ABID97_RS22745 at 4712.239 kb on - strand, within ABID97_RS22745 at 4712.251 kb on + strand, within ABID97_RS22745 at 4712.252 kb on - strand, within ABID97_RS22745 at 4712.361 kb on + strand, within ABID97_RS22745 at 4712.361 kb on + strand, within ABID97_RS22745
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,709,660 + ABID97_RS22735 0.27 -0.3 4,709,661 - ABID97_RS22735 0.27 +0.3 4,709,877 - ABID97_RS22735 0.49 -0.0 4,709,877 - ABID97_RS22735 0.49 -0.8 4,709,931 - ABID97_RS22735 0.54 -0.2 4,710,051 - ABID97_RS22735 0.66 -0.2 4,710,074 + ABID97_RS22735 0.68 -0.3 4,710,504 + +0.1 4,710,522 + +0.0 4,710,523 - +1.6 4,710,695 - ABID97_RS22740 0.19 +1.0 4,710,932 - ABID97_RS22740 0.43 +0.3 4,711,513 + -0.3 4,711,554 + +0.8 4,711,554 + -0.2 4,711,554 + -0.5 4,711,555 - -0.0 4,712,137 - ABID97_RS22745 0.62 +0.2 4,712,238 + ABID97_RS22745 0.72 +0.6 4,712,238 + ABID97_RS22745 0.72 +1.2 4,712,239 - ABID97_RS22745 0.72 +0.7 4,712,251 + ABID97_RS22745 0.73 -0.1 4,712,252 - ABID97_RS22745 0.73 -0.4 4,712,361 + ABID97_RS22745 0.84 -0.3 4,712,361 + ABID97_RS22745 0.84 -0.1
Or see this region's nucleotide sequence