Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22100

Experiment: D-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS22095 and ABID97_RS22100 are separated by 338 nucleotidesABID97_RS22100 and ABID97_RS22105 overlap by 8 nucleotides ABID97_RS22095: ABID97_RS22095 - ABC transporter permease, at 4,571,841 to 4,572,761 _RS22095 ABID97_RS22100: ABID97_RS22100 - ABC transporter permease, at 4,573,100 to 4,574,251 _RS22100 ABID97_RS22105: ABID97_RS22105 - ABC transporter ATP-binding protein, at 4,574,244 to 4,575,782 _RS22105 Position (kb) 4573 4574 4575Strain fitness (log2 ratio) -1 0 1 2at 4572.152 kb on - strand, within ABID97_RS22095at 4572.152 kb on - strand, within ABID97_RS22095at 4572.331 kb on + strand, within ABID97_RS22095at 4572.331 kb on + strand, within ABID97_RS22095at 4572.401 kb on - strand, within ABID97_RS22095at 4572.496 kb on + strand, within ABID97_RS22095at 4572.738 kb on + strandat 4572.739 kb on - strandat 4572.751 kb on + strandat 4572.752 kb on - strandat 4573.062 kb on + strandat 4573.063 kb on - strandat 4573.082 kb on + strandat 4573.082 kb on + strandat 4573.086 kb on + strandat 4573.102 kb on - strandat 4573.329 kb on + strand, within ABID97_RS22100at 4573.329 kb on + strand, within ABID97_RS22100at 4573.431 kb on + strand, within ABID97_RS22100at 4573.431 kb on + strand, within ABID97_RS22100at 4573.731 kb on + strand, within ABID97_RS22100at 4573.732 kb on - strand, within ABID97_RS22100at 4573.732 kb on - strand, within ABID97_RS22100at 4573.732 kb on - strand, within ABID97_RS22100at 4573.768 kb on - strand, within ABID97_RS22100at 4574.245 kb on + strandat 4574.246 kb on - strandat 4574.246 kb on - strandat 4574.566 kb on + strand, within ABID97_RS22105at 4574.891 kb on - strand, within ABID97_RS22105at 4575.208 kb on + strand, within ABID97_RS22105at 4575.209 kb on - strand, within ABID97_RS22105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
remove
4,572,152 - ABID97_RS22095 0.34 +0.5
4,572,152 - ABID97_RS22095 0.34 +1.8
4,572,331 + ABID97_RS22095 0.53 +1.1
4,572,331 + ABID97_RS22095 0.53 +1.3
4,572,401 - ABID97_RS22095 0.61 +1.3
4,572,496 + ABID97_RS22095 0.71 +1.1
4,572,738 + +0.4
4,572,739 - +1.2
4,572,751 + +2.4
4,572,752 - +0.9
4,573,062 + -1.2
4,573,063 - +0.1
4,573,082 + +0.1
4,573,082 + -0.2
4,573,086 + +2.2
4,573,102 - -0.9
4,573,329 + ABID97_RS22100 0.20 +1.1
4,573,329 + ABID97_RS22100 0.20 -0.2
4,573,431 + ABID97_RS22100 0.29 +1.1
4,573,431 + ABID97_RS22100 0.29 -0.3
4,573,731 + ABID97_RS22100 0.55 +1.1
4,573,732 - ABID97_RS22100 0.55 +1.6
4,573,732 - ABID97_RS22100 0.55 +1.8
4,573,732 - ABID97_RS22100 0.55 +0.1
4,573,768 - ABID97_RS22100 0.58 +1.4
4,574,245 + +1.2
4,574,246 - +2.5
4,574,246 - +1.3
4,574,566 + ABID97_RS22105 0.21 +1.2
4,574,891 - ABID97_RS22105 0.42 +1.1
4,575,208 + ABID97_RS22105 0.63 +1.5
4,575,209 - ABID97_RS22105 0.63 +1.0

Or see this region's nucleotide sequence