Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22095 and ABID97_RS22100 are separated by 338 nucleotides ABID97_RS22100 and ABID97_RS22105 overlap by 8 nucleotides
ABID97_RS22095: ABID97_RS22095 - ABC transporter permease, at 4,571,841 to 4,572,761
_RS22095
ABID97_RS22100: ABID97_RS22100 - ABC transporter permease, at 4,573,100 to 4,574,251
_RS22100
ABID97_RS22105: ABID97_RS22105 - ABC transporter ATP-binding protein, at 4,574,244 to 4,575,782
_RS22105
Position (kb)
4573
4574
4575 Strain fitness (log2 ratio)
-1
0
1
2 at 4572.152 kb on - strand, within ABID97_RS22095 at 4572.152 kb on - strand, within ABID97_RS22095 at 4572.331 kb on + strand, within ABID97_RS22095 at 4572.331 kb on + strand, within ABID97_RS22095 at 4572.401 kb on - strand, within ABID97_RS22095 at 4572.496 kb on + strand, within ABID97_RS22095 at 4572.738 kb on + strand at 4572.739 kb on - strand at 4572.751 kb on + strand at 4572.752 kb on - strand at 4573.062 kb on + strand at 4573.063 kb on - strand at 4573.082 kb on + strand at 4573.082 kb on + strand at 4573.086 kb on + strand at 4573.102 kb on - strand at 4573.329 kb on + strand, within ABID97_RS22100 at 4573.329 kb on + strand, within ABID97_RS22100 at 4573.431 kb on + strand, within ABID97_RS22100 at 4573.431 kb on + strand, within ABID97_RS22100 at 4573.731 kb on + strand, within ABID97_RS22100 at 4573.732 kb on - strand, within ABID97_RS22100 at 4573.732 kb on - strand, within ABID97_RS22100 at 4573.732 kb on - strand, within ABID97_RS22100 at 4573.768 kb on - strand, within ABID97_RS22100 at 4574.245 kb on + strand at 4574.246 kb on - strand at 4574.246 kb on - strand at 4574.566 kb on + strand, within ABID97_RS22105 at 4574.891 kb on - strand, within ABID97_RS22105 at 4575.208 kb on + strand, within ABID97_RS22105 at 4575.209 kb on - strand, within ABID97_RS22105
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,572,152 - ABID97_RS22095 0.34 +0.5 4,572,152 - ABID97_RS22095 0.34 +1.8 4,572,331 + ABID97_RS22095 0.53 +1.1 4,572,331 + ABID97_RS22095 0.53 +1.3 4,572,401 - ABID97_RS22095 0.61 +1.3 4,572,496 + ABID97_RS22095 0.71 +1.1 4,572,738 + +0.4 4,572,739 - +1.2 4,572,751 + +2.4 4,572,752 - +0.9 4,573,062 + -1.2 4,573,063 - +0.1 4,573,082 + +0.1 4,573,082 + -0.2 4,573,086 + +2.2 4,573,102 - -0.9 4,573,329 + ABID97_RS22100 0.20 +1.1 4,573,329 + ABID97_RS22100 0.20 -0.2 4,573,431 + ABID97_RS22100 0.29 +1.1 4,573,431 + ABID97_RS22100 0.29 -0.3 4,573,731 + ABID97_RS22100 0.55 +1.1 4,573,732 - ABID97_RS22100 0.55 +1.6 4,573,732 - ABID97_RS22100 0.55 +1.8 4,573,732 - ABID97_RS22100 0.55 +0.1 4,573,768 - ABID97_RS22100 0.58 +1.4 4,574,245 + +1.2 4,574,246 - +2.5 4,574,246 - +1.3 4,574,566 + ABID97_RS22105 0.21 +1.2 4,574,891 - ABID97_RS22105 0.42 +1.1 4,575,208 + ABID97_RS22105 0.63 +1.5 4,575,209 - ABID97_RS22105 0.63 +1.0
Or see this region's nucleotide sequence