Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21385

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21380 and ABID97_RS21385 are separated by 4 nucleotidesABID97_RS21385 and ABID97_RS21390 are separated by 111 nucleotides ABID97_RS21380: ABID97_RS21380 - 3-deoxy-D-manno-octulosonic acid transferase, at 4,410,212 to 4,411,589 _RS21380 ABID97_RS21385: ABID97_RS21385 - phosphomannomutase/phosphoglucomutase, at 4,411,594 to 4,412,976 _RS21385 ABID97_RS21390: ABID97_RS21390 - Ada metal-binding domain-containing protein, at 4,413,088 to 4,414,665 _RS21390 Position (kb) 4411 4412 4413Strain fitness (log2 ratio) -2 -1 0 1 2at 4411.666 kb on - strandat 4411.965 kb on - strand, within ABID97_RS21385at 4411.965 kb on - strand, within ABID97_RS21385at 4412.151 kb on - strand, within ABID97_RS21385at 4412.151 kb on - strand, within ABID97_RS21385at 4412.520 kb on - strand, within ABID97_RS21385at 4412.658 kb on - strand, within ABID97_RS21385at 4412.724 kb on - strand, within ABID97_RS21385at 4412.946 kb on - strandat 4412.946 kb on - strandat 4412.946 kb on - strandat 4412.995 kb on - strandat 4413.000 kb on - strandat 4413.016 kb on + strandat 4413.016 kb on + strandat 4413.093 kb on + strandat 4413.136 kb on + strandat 4413.137 kb on - strandat 4413.209 kb on - strandat 4413.209 kb on - strandat 4413.209 kb on - strandat 4413.523 kb on + strand, within ABID97_RS21390at 4413.853 kb on + strand, within ABID97_RS21390at 4413.854 kb on - strand, within ABID97_RS21390at 4413.854 kb on - strand, within ABID97_RS21390

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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4,411,666 - +1.4
4,411,965 - ABID97_RS21385 0.27 +2.0
4,411,965 - ABID97_RS21385 0.27 -0.5
4,412,151 - ABID97_RS21385 0.40 +2.3
4,412,151 - ABID97_RS21385 0.40 +2.3
4,412,520 - ABID97_RS21385 0.67 +2.6
4,412,658 - ABID97_RS21385 0.77 +2.3
4,412,724 - ABID97_RS21385 0.82 +2.5
4,412,946 - +2.3
4,412,946 - +1.0
4,412,946 - +2.3
4,412,995 - -1.8
4,413,000 - -0.4
4,413,016 + -0.4
4,413,016 + +0.3
4,413,093 + +0.9
4,413,136 + -0.8
4,413,137 - -0.8
4,413,209 - +0.4
4,413,209 - -0.4
4,413,209 - -0.1
4,413,523 + ABID97_RS21390 0.28 -0.5
4,413,853 + ABID97_RS21390 0.48 -0.9
4,413,854 - ABID97_RS21390 0.49 -0.2
4,413,854 - ABID97_RS21390 0.49 +1.6

Or see this region's nucleotide sequence