Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21350 and ABID97_RS21355 are separated by 46 nucleotides ABID97_RS21355 and ABID97_RS21360 are separated by 101 nucleotides ABID97_RS21360 and ABID97_RS21365 are separated by 94 nucleotides ABID97_RS21365 and ABID97_RS21370 are separated by 14 nucleotides
ABID97_RS21350: ABID97_RS21350 - hypothetical protein, at 4,405,747 to 4,406,139
_RS21350
ABID97_RS21355: ABID97_RS21355 - peptide-methionine (S)-S-oxide reductase MsrA, at 4,406,186 to 4,406,737
_RS21355
ABID97_RS21360: ABID97_RS21360 - TetR/AcrR family transcriptional regulator, at 4,406,839 to 4,407,516
_RS21360
ABID97_RS21365: ABID97_RS21365 - protein-L-isoaspartate O-methyltransferase, at 4,407,611 to 4,408,288
_RS21365
ABID97_RS21370: ABID97_RS21370 - rhodanese-like domain-containing protein, at 4,408,303 to 4,408,641
_RS21370
Position (kb) 4406
4407
4408 Strain fitness (log2 ratio) -2
-1
0
1 at 4405.902 kb on - strand, within ABID97_RS21350 at 4405.902 kb on - strand, within ABID97_RS21350 at 4406.257 kb on - strand, within ABID97_RS21355 at 4406.283 kb on + strand, within ABID97_RS21355 at 4406.283 kb on + strand, within ABID97_RS21355 at 4406.284 kb on - strand, within ABID97_RS21355 at 4406.284 kb on - strand, within ABID97_RS21355 at 4406.314 kb on - strand, within ABID97_RS21355 at 4406.355 kb on + strand, within ABID97_RS21355 at 4406.356 kb on - strand, within ABID97_RS21355 at 4406.424 kb on + strand, within ABID97_RS21355 at 4406.424 kb on + strand, within ABID97_RS21355 at 4406.424 kb on + strand, within ABID97_RS21355 at 4406.424 kb on + strand, within ABID97_RS21355 at 4406.424 kb on + strand, within ABID97_RS21355 at 4406.424 kb on + strand, within ABID97_RS21355 at 4406.425 kb on - strand, within ABID97_RS21355 at 4406.595 kb on + strand, within ABID97_RS21355 at 4406.737 kb on + strand at 4406.737 kb on + strand at 4406.737 kb on + strand at 4406.738 kb on - strand at 4406.738 kb on - strand at 4406.738 kb on - strand at 4406.814 kb on + strand at 4406.814 kb on + strand at 4406.814 kb on + strand at 4406.832 kb on + strand at 4407.148 kb on + strand, within ABID97_RS21360 at 4407.358 kb on + strand, within ABID97_RS21360 at 4407.358 kb on + strand, within ABID97_RS21360 at 4407.358 kb on + strand, within ABID97_RS21360 at 4407.359 kb on - strand, within ABID97_RS21360 at 4407.359 kb on - strand, within ABID97_RS21360 at 4407.451 kb on + strand at 4407.481 kb on + strand at 4407.481 kb on + strand at 4407.566 kb on + strand at 4407.731 kb on + strand, within ABID97_RS21365 at 4407.731 kb on + strand, within ABID97_RS21365 at 4407.731 kb on + strand, within ABID97_RS21365 at 4407.732 kb on - strand, within ABID97_RS21365 at 4407.732 kb on - strand, within ABID97_RS21365 at 4407.732 kb on - strand, within ABID97_RS21365 at 4407.732 kb on - strand, within ABID97_RS21365
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,405,902 - ABID97_RS21350 0.39 +0.5 4,405,902 - ABID97_RS21350 0.39 +0.4 4,406,257 - ABID97_RS21355 0.13 -1.2 4,406,283 + ABID97_RS21355 0.18 -0.8 4,406,283 + ABID97_RS21355 0.18 -0.2 4,406,284 - ABID97_RS21355 0.18 -0.3 4,406,284 - ABID97_RS21355 0.18 +0.3 4,406,314 - ABID97_RS21355 0.23 -0.5 4,406,355 + ABID97_RS21355 0.31 -0.5 4,406,356 - ABID97_RS21355 0.31 -2.4 4,406,424 + ABID97_RS21355 0.43 -0.2 4,406,424 + ABID97_RS21355 0.43 -0.5 4,406,424 + ABID97_RS21355 0.43 -0.4 4,406,424 + ABID97_RS21355 0.43 +1.6 4,406,424 + ABID97_RS21355 0.43 -0.2 4,406,424 + ABID97_RS21355 0.43 -1.8 4,406,425 - ABID97_RS21355 0.43 -0.5 4,406,595 + ABID97_RS21355 0.74 -0.2 4,406,737 + +0.2 4,406,737 + -0.6 4,406,737 + +0.4 4,406,738 - +0.2 4,406,738 - -0.3 4,406,738 - -0.5 4,406,814 + +0.8 4,406,814 + -0.6 4,406,814 + -0.7 4,406,832 + -1.2 4,407,148 + ABID97_RS21360 0.46 +0.2 4,407,358 + ABID97_RS21360 0.77 +1.6 4,407,358 + ABID97_RS21360 0.77 +0.6 4,407,358 + ABID97_RS21360 0.77 +0.3 4,407,359 - ABID97_RS21360 0.77 +0.9 4,407,359 - ABID97_RS21360 0.77 +0.7 4,407,451 + +0.6 4,407,481 + +0.1 4,407,481 + +0.4 4,407,566 + +0.2 4,407,731 + ABID97_RS21365 0.18 +0.2 4,407,731 + ABID97_RS21365 0.18 +0.2 4,407,731 + ABID97_RS21365 0.18 -0.2 4,407,732 - ABID97_RS21365 0.18 +0.1 4,407,732 - ABID97_RS21365 0.18 +1.6 4,407,732 - ABID97_RS21365 0.18 +0.3 4,407,732 - ABID97_RS21365 0.18 +0.7
Or see this region's nucleotide sequence