Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21260 and ABID97_RS21265 overlap by 4 nucleotides ABID97_RS21265 and ABID97_RS21270 are separated by 109 nucleotides ABID97_RS21270 and ABID97_RS21275 are separated by 39 nucleotides ABID97_RS21275 and ABID97_RS21280 are separated by 294 nucleotides
ABID97_RS21260: ABID97_RS21260 - iron ABC transporter permease, at 4,388,127 to 4,389,806
_RS21260
ABID97_RS21265: ABID97_RS21265 - ABC transporter ATP-binding protein, at 4,389,803 to 4,390,486
_RS21265
ABID97_RS21270: ABID97_RS21270 - glutathione S-transferase family protein, at 4,390,596 to 4,391,276
_RS21270
ABID97_RS21275: ABID97_RS21275 - lactoylglutathione lyase, at 4,391,316 to 4,391,747
_RS21275
ABID97_RS21280: ABID97_RS21280 - hypothetical protein, at 4,392,042 to 4,393,184
_RS21280
Position (kb) 4390
4391
4392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4389.663 kb on + strand at 4389.687 kb on + strand at 4389.688 kb on - strand at 4390.079 kb on + strand, within ABID97_RS21265 at 4390.080 kb on - strand, within ABID97_RS21265 at 4390.080 kb on - strand, within ABID97_RS21265 at 4390.484 kb on + strand at 4390.484 kb on + strand at 4390.484 kb on + strand at 4390.485 kb on - strand at 4390.485 kb on - strand at 4390.485 kb on - strand at 4390.485 kb on - strand at 4390.638 kb on + strand at 4390.638 kb on + strand at 4390.639 kb on - strand at 4390.678 kb on + strand, within ABID97_RS21270 at 4390.679 kb on - strand, within ABID97_RS21270 at 4390.684 kb on - strand, within ABID97_RS21270 at 4390.824 kb on + strand, within ABID97_RS21270 at 4390.824 kb on + strand, within ABID97_RS21270 at 4390.825 kb on - strand, within ABID97_RS21270 at 4390.825 kb on - strand, within ABID97_RS21270 at 4390.825 kb on - strand, within ABID97_RS21270 at 4391.091 kb on + strand, within ABID97_RS21270 at 4391.126 kb on + strand, within ABID97_RS21270 at 4391.126 kb on + strand, within ABID97_RS21270 at 4391.373 kb on + strand, within ABID97_RS21275 at 4391.373 kb on + strand, within ABID97_RS21275 at 4391.374 kb on - strand, within ABID97_RS21275 at 4391.374 kb on - strand, within ABID97_RS21275 at 4391.374 kb on - strand, within ABID97_RS21275 at 4391.376 kb on - strand, within ABID97_RS21275 at 4391.425 kb on - strand, within ABID97_RS21275 at 4391.425 kb on - strand, within ABID97_RS21275 at 4391.425 kb on - strand, within ABID97_RS21275 at 4391.430 kb on + strand, within ABID97_RS21275 at 4391.430 kb on + strand, within ABID97_RS21275 at 4391.431 kb on - strand, within ABID97_RS21275 at 4391.431 kb on - strand, within ABID97_RS21275 at 4391.452 kb on - strand, within ABID97_RS21275 at 4391.493 kb on + strand, within ABID97_RS21275 at 4391.494 kb on - strand, within ABID97_RS21275 at 4391.494 kb on - strand, within ABID97_RS21275 at 4391.494 kb on - strand, within ABID97_RS21275 at 4391.515 kb on - strand, within ABID97_RS21275 at 4391.565 kb on + strand, within ABID97_RS21275 at 4391.566 kb on - strand, within ABID97_RS21275 at 4391.673 kb on + strand, within ABID97_RS21275 at 4391.673 kb on + strand, within ABID97_RS21275 at 4391.674 kb on - strand, within ABID97_RS21275 at 4391.746 kb on - strand at 4391.949 kb on - strand at 4391.949 kb on - strand at 4391.950 kb on + strand at 4391.951 kb on - strand at 4392.011 kb on + strand at 4392.011 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,389,663 + -0.6 4,389,687 + +0.2 4,389,688 - +0.5 4,390,079 + ABID97_RS21265 0.40 +0.1 4,390,080 - ABID97_RS21265 0.40 +0.0 4,390,080 - ABID97_RS21265 0.40 -0.7 4,390,484 + +0.1 4,390,484 + +0.1 4,390,484 + +0.5 4,390,485 - +0.2 4,390,485 - +0.5 4,390,485 - +0.6 4,390,485 - -0.1 4,390,638 + -1.9 4,390,638 + +0.3 4,390,639 - +0.1 4,390,678 + ABID97_RS21270 0.12 -0.3 4,390,679 - ABID97_RS21270 0.12 +0.5 4,390,684 - ABID97_RS21270 0.13 +1.3 4,390,824 + ABID97_RS21270 0.33 +0.6 4,390,824 + ABID97_RS21270 0.33 -0.1 4,390,825 - ABID97_RS21270 0.34 +0.1 4,390,825 - ABID97_RS21270 0.34 +2.2 4,390,825 - ABID97_RS21270 0.34 -0.6 4,391,091 + ABID97_RS21270 0.73 +0.8 4,391,126 + ABID97_RS21270 0.78 +0.8 4,391,126 + ABID97_RS21270 0.78 +0.6 4,391,373 + ABID97_RS21275 0.13 +0.5 4,391,373 + ABID97_RS21275 0.13 -0.4 4,391,374 - ABID97_RS21275 0.13 +0.2 4,391,374 - ABID97_RS21275 0.13 +0.2 4,391,374 - ABID97_RS21275 0.13 +0.5 4,391,376 - ABID97_RS21275 0.14 +2.6 4,391,425 - ABID97_RS21275 0.25 +1.0 4,391,425 - ABID97_RS21275 0.25 +0.4 4,391,425 - ABID97_RS21275 0.25 +0.3 4,391,430 + ABID97_RS21275 0.26 +0.1 4,391,430 + ABID97_RS21275 0.26 +0.2 4,391,431 - ABID97_RS21275 0.27 -0.1 4,391,431 - ABID97_RS21275 0.27 +0.5 4,391,452 - ABID97_RS21275 0.31 +0.1 4,391,493 + ABID97_RS21275 0.41 -0.8 4,391,494 - ABID97_RS21275 0.41 +0.1 4,391,494 - ABID97_RS21275 0.41 +2.2 4,391,494 - ABID97_RS21275 0.41 +0.4 4,391,515 - ABID97_RS21275 0.46 -1.1 4,391,565 + ABID97_RS21275 0.58 -0.0 4,391,566 - ABID97_RS21275 0.58 -0.7 4,391,673 + ABID97_RS21275 0.83 -0.3 4,391,673 + ABID97_RS21275 0.83 -0.8 4,391,674 - ABID97_RS21275 0.83 +0.4 4,391,746 - +0.3 4,391,949 - -0.6 4,391,949 - -0.1 4,391,950 + -0.4 4,391,951 - -0.6 4,392,011 + -0.3 4,392,011 + -0.4
Or see this region's nucleotide sequence