Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20030 and ABID97_RS20035 are separated by 14 nucleotides ABID97_RS20035 and ABID97_RS20040 are separated by 0 nucleotides ABID97_RS20040 and ABID97_RS20045 are separated by 35 nucleotides ABID97_RS20045 and ABID97_RS20050 are separated by 49 nucleotides
ABID97_RS20030: ABID97_RS20030 - sugar kinase, at 4,140,793 to 4,141,746
_RS20030
ABID97_RS20035: ABID97_RS20035 - glutamine ABC transporter ATP-binding protein, at 4,141,761 to 4,142,504
_RS20035
ABID97_RS20040: ABID97_RS20040 - amino acid ABC transporter ATP-binding protein, at 4,142,505 to 4,143,260
_RS20040
ABID97_RS20045: ABID97_RS20045 - transporter substrate-binding domain-containing protein, at 4,143,296 to 4,144,093
_RS20045
ABID97_RS20050: ABID97_RS20050 - amino acid ABC transporter permease, at 4,144,143 to 4,144,796
_RS20050
Position (kb) 4142
4143
4144 Strain fitness (log2 ratio) -1
0
1
2 at 4141.541 kb on + strand, within ABID97_RS20030 at 4141.542 kb on - strand, within ABID97_RS20030 at 4141.960 kb on + strand, within ABID97_RS20035 at 4141.960 kb on + strand, within ABID97_RS20035 at 4142.848 kb on + strand, within ABID97_RS20040 at 4142.849 kb on - strand, within ABID97_RS20040 at 4142.888 kb on - strand, within ABID97_RS20040 at 4144.140 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 4,141,541 + ABID97_RS20030 0.78 -0.1 4,141,542 - ABID97_RS20030 0.79 -0.4 4,141,960 + ABID97_RS20035 0.27 -0.2 4,141,960 + ABID97_RS20035 0.27 +0.8 4,142,848 + ABID97_RS20040 0.45 +2.7 4,142,849 - ABID97_RS20040 0.46 +0.8 4,142,888 - ABID97_RS20040 0.51 +0.5 4,144,140 + -1.1
Or see this region's nucleotide sequence