Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19675

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19665 and ABID97_RS19670 are separated by 127 nucleotidesABID97_RS19670 and ABID97_RS19675 are separated by 7 nucleotidesABID97_RS19675 and ABID97_RS19680 are separated by 90 nucleotidesABID97_RS19680 and ABID97_RS19685 are separated by 38 nucleotides ABID97_RS19665: ABID97_RS19665 - DUF3014 domain-containing protein, at 4,062,317 to 4,063,261 _RS19665 ABID97_RS19670: ABID97_RS19670 - phospholipase, at 4,063,389 to 4,064,072 _RS19670 ABID97_RS19675: ABID97_RS19675 - nitronate monooxygenase, at 4,064,080 to 4,065,138 _RS19675 ABID97_RS19680: ABID97_RS19680 - DsbA family oxidoreductase, at 4,065,229 to 4,065,912 _RS19680 ABID97_RS19685: ABID97_RS19685 - MFS transporter, at 4,065,951 to 4,067,360 _RS19685 Position (kb) 4064 4065 4066Strain fitness (log2 ratio) -2 -1 0 1 2at 4063.113 kb on + strand, within ABID97_RS19665at 4063.127 kb on + strand, within ABID97_RS19665at 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.307 kb on + strandat 4063.308 kb on - strandat 4063.308 kb on - strandat 4063.308 kb on - strandat 4063.308 kb on - strandat 4063.401 kb on - strandat 4063.873 kb on + strand, within ABID97_RS19670at 4063.894 kb on + strand, within ABID97_RS19670at 4063.895 kb on - strand, within ABID97_RS19670at 4063.895 kb on - strand, within ABID97_RS19670at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.417 kb on + strand, within ABID97_RS19675at 4064.418 kb on - strand, within ABID97_RS19675at 4064.418 kb on - strand, within ABID97_RS19675at 4064.859 kb on - strand, within ABID97_RS19675at 4064.861 kb on + strand, within ABID97_RS19675at 4064.862 kb on - strand, within ABID97_RS19675at 4064.942 kb on + strand, within ABID97_RS19675at 4064.943 kb on - strand, within ABID97_RS19675at 4065.371 kb on + strand, within ABID97_RS19680at 4065.372 kb on - strand, within ABID97_RS19680at 4065.372 kb on - strand, within ABID97_RS19680at 4065.372 kb on - strand, within ABID97_RS19680at 4065.512 kb on + strand, within ABID97_RS19680at 4065.605 kb on + strand, within ABID97_RS19680at 4065.605 kb on + strand, within ABID97_RS19680at 4065.606 kb on - strand, within ABID97_RS19680

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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4,063,113 + ABID97_RS19665 0.84 -0.1
4,063,127 + ABID97_RS19665 0.86 -0.1
4,063,307 + -0.3
4,063,307 + -0.4
4,063,307 + +0.1
4,063,307 + -0.1
4,063,307 + +0.4
4,063,307 + -0.8
4,063,308 - +0.2
4,063,308 - +0.5
4,063,308 - -0.1
4,063,308 - -0.4
4,063,401 - +1.1
4,063,873 + ABID97_RS19670 0.71 -0.2
4,063,894 + ABID97_RS19670 0.74 -0.5
4,063,895 - ABID97_RS19670 0.74 -0.7
4,063,895 - ABID97_RS19670 0.74 +0.1
4,064,417 + ABID97_RS19675 0.32 -0.4
4,064,417 + ABID97_RS19675 0.32 +0.8
4,064,417 + ABID97_RS19675 0.32 -0.6
4,064,417 + ABID97_RS19675 0.32 -0.7
4,064,417 + ABID97_RS19675 0.32 +2.1
4,064,417 + ABID97_RS19675 0.32 +0.1
4,064,418 - ABID97_RS19675 0.32 +0.1
4,064,418 - ABID97_RS19675 0.32 -0.4
4,064,859 - ABID97_RS19675 0.74 +1.1
4,064,861 + ABID97_RS19675 0.74 -0.2
4,064,862 - ABID97_RS19675 0.74 -0.3
4,064,942 + ABID97_RS19675 0.81 -1.8
4,064,943 - ABID97_RS19675 0.81 +1.0
4,065,371 + ABID97_RS19680 0.21 +0.1
4,065,372 - ABID97_RS19680 0.21 +0.3
4,065,372 - ABID97_RS19680 0.21 +0.0
4,065,372 - ABID97_RS19680 0.21 -0.6
4,065,512 + ABID97_RS19680 0.41 -0.1
4,065,605 + ABID97_RS19680 0.55 +0.0
4,065,605 + ABID97_RS19680 0.55 -0.2
4,065,606 - ABID97_RS19680 0.55 -0.9

Or see this region's nucleotide sequence