Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18990

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18985 and ABID97_RS18990 are separated by 455 nucleotidesABID97_RS18990 and ABID97_RS18995 are separated by 38 nucleotidesABID97_RS18995 and ABID97_RS19000 are separated by 7 nucleotides ABID97_RS18985: ABID97_RS18985 - SDR family NAD(P)-dependent oxidoreductase, at 3,909,757 to 3,910,545 _RS18985 ABID97_RS18990: ABID97_RS18990 - SDR family oxidoreductase, at 3,911,001 to 3,911,759 _RS18990 ABID97_RS18995: ABID97_RS18995 - DUF3237 domain-containing protein, at 3,911,798 to 3,912,265 _RS18995 ABID97_RS19000: ABID97_RS19000 - VOC family protein, at 3,912,273 to 3,912,905 _RS19000 Position (kb) 3911 3912Strain fitness (log2 ratio) -1 0 1at 3910.258 kb on - strand, within ABID97_RS18985at 3910.964 kb on - strandat 3911.022 kb on + strandat 3911.039 kb on + strandat 3911.039 kb on + strandat 3911.485 kb on + strand, within ABID97_RS18990at 3911.821 kb on - strandat 3911.925 kb on + strand, within ABID97_RS18995at 3912.007 kb on - strand, within ABID97_RS18995at 3912.013 kb on + strand, within ABID97_RS18995at 3912.016 kb on - strand, within ABID97_RS18995at 3912.016 kb on - strand, within ABID97_RS18995at 3912.229 kb on + strandat 3912.466 kb on + strand, within ABID97_RS19000at 3912.579 kb on + strand, within ABID97_RS19000at 3912.580 kb on - strand, within ABID97_RS19000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,910,258 - ABID97_RS18985 0.63 -0.4
3,910,964 - +0.0
3,911,022 + -0.1
3,911,039 + +0.1
3,911,039 + +0.1
3,911,485 + ABID97_RS18990 0.64 +0.5
3,911,821 - -0.7
3,911,925 + ABID97_RS18995 0.27 -0.7
3,912,007 - ABID97_RS18995 0.45 -0.6
3,912,013 + ABID97_RS18995 0.46 -0.1
3,912,016 - ABID97_RS18995 0.47 +0.3
3,912,016 - ABID97_RS18995 0.47 -0.4
3,912,229 + -0.2
3,912,466 + ABID97_RS19000 0.30 -0.2
3,912,579 + ABID97_RS19000 0.48 -0.0
3,912,580 - ABID97_RS19000 0.48 -0.5

Or see this region's nucleotide sequence