Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18985

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18980 and ABID97_RS18985 are separated by 184 nucleotidesABID97_RS18985 and ABID97_RS18990 are separated by 455 nucleotides ABID97_RS18980: ABID97_RS18980 - SDR family oxidoreductase, at 3,908,787 to 3,909,572 _RS18980 ABID97_RS18985: ABID97_RS18985 - SDR family NAD(P)-dependent oxidoreductase, at 3,909,757 to 3,910,545 _RS18985 ABID97_RS18990: ABID97_RS18990 - SDR family oxidoreductase, at 3,911,001 to 3,911,759 _RS18990 Position (kb) 3909 3910 3911Strain fitness (log2 ratio) -1 0 1at 3908.815 kb on + strandat 3909.315 kb on + strand, within ABID97_RS18980at 3909.316 kb on - strand, within ABID97_RS18980at 3909.668 kb on + strandat 3909.668 kb on + strandat 3909.669 kb on - strandat 3909.717 kb on + strandat 3909.717 kb on + strandat 3909.899 kb on + strand, within ABID97_RS18985at 3910.258 kb on - strand, within ABID97_RS18985at 3910.964 kb on - strandat 3911.022 kb on + strandat 3911.039 kb on + strandat 3911.039 kb on + strandat 3911.485 kb on + strand, within ABID97_RS18990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,908,815 + -0.3
3,909,315 + ABID97_RS18980 0.67 +0.5
3,909,316 - ABID97_RS18980 0.67 -0.3
3,909,668 + -0.5
3,909,668 + -0.6
3,909,669 - +0.1
3,909,717 + -0.2
3,909,717 + -1.2
3,909,899 + ABID97_RS18985 0.18 -0.4
3,910,258 - ABID97_RS18985 0.63 -0.4
3,910,964 - +0.0
3,911,022 + -0.1
3,911,039 + +0.1
3,911,039 + +0.1
3,911,485 + ABID97_RS18990 0.64 +0.5

Or see this region's nucleotide sequence