Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18360

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18350 and ABID97_RS18355 are separated by 151 nucleotidesABID97_RS18355 and ABID97_RS18360 are separated by 450 nucleotidesABID97_RS18360 and ABID97_RS18365 are separated by 161 nucleotidesABID97_RS18365 and ABID97_RS18370 overlap by 4 nucleotidesABID97_RS18370 and ABID97_RS18375 are separated by 29 nucleotidesABID97_RS18375 and ABID97_RS18380 are separated by 52 nucleotides ABID97_RS18350: ABID97_RS18350 - hypothetical protein, at 3,793,502 to 3,794,119 _RS18350 ABID97_RS18355: ABID97_RS18355 - hypothetical protein, at 3,794,271 to 3,794,495 _RS18355 ABID97_RS18360: ABID97_RS18360 - hypothetical protein, at 3,794,946 to 3,795,911 _RS18360 ABID97_RS18365: ABID97_RS18365 - hypothetical protein, at 3,796,073 to 3,796,198 _RS18365 ABID97_RS18370: ABID97_RS18370 - hypothetical protein, at 3,796,195 to 3,796,467 _RS18370 ABID97_RS18375: ABID97_RS18375 - hypothetical protein, at 3,796,497 to 3,796,730 _RS18375 ABID97_RS18380: ABID97_RS18380 - hypothetical protein, at 3,796,783 to 3,796,965 _RS18380 Position (kb) 3794 3795 3796Strain fitness (log2 ratio) -1 0 1at 3794.202 kb on - strandat 3794.288 kb on - strandat 3794.288 kb on - strandat 3794.358 kb on + strand, within ABID97_RS18355at 3794.496 kb on - strandat 3794.496 kb on - strandat 3794.496 kb on - strandat 3794.496 kb on - strandat 3794.689 kb on + strandat 3794.690 kb on - strandat 3794.873 kb on - strandat 3794.876 kb on + strandat 3794.877 kb on - strandat 3794.877 kb on - strandat 3795.031 kb on - strandat 3795.056 kb on - strand, within ABID97_RS18360at 3795.279 kb on - strand, within ABID97_RS18360at 3795.293 kb on + strand, within ABID97_RS18360at 3795.293 kb on + strand, within ABID97_RS18360at 3795.668 kb on - strand, within ABID97_RS18360at 3795.818 kb on - strandat 3795.839 kb on + strandat 3796.202 kb on - strandat 3796.522 kb on - strand, within ABID97_RS18375at 3796.622 kb on - strand, within ABID97_RS18375at 3796.867 kb on + strand, within ABID97_RS18380at 3796.909 kb on + strand, within ABID97_RS18380at 3796.910 kb on - strand, within ABID97_RS18380

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,794,202 - -0.1
3,794,288 - +0.1
3,794,288 - +0.3
3,794,358 + ABID97_RS18355 0.39 +0.4
3,794,496 - +0.4
3,794,496 - +0.1
3,794,496 - -1.1
3,794,496 - -0.4
3,794,689 + +0.2
3,794,690 - +0.5
3,794,873 - +0.4
3,794,876 + -0.1
3,794,877 - -0.5
3,794,877 - +0.3
3,795,031 - -0.2
3,795,056 - ABID97_RS18360 0.11 -0.4
3,795,279 - ABID97_RS18360 0.34 +1.3
3,795,293 + ABID97_RS18360 0.36 +0.4
3,795,293 + ABID97_RS18360 0.36 +1.3
3,795,668 - ABID97_RS18360 0.75 +0.0
3,795,818 - +0.5
3,795,839 + -0.5
3,796,202 - +0.6
3,796,522 - ABID97_RS18375 0.11 -1.0
3,796,622 - ABID97_RS18375 0.53 +0.7
3,796,867 + ABID97_RS18380 0.46 +0.1
3,796,909 + ABID97_RS18380 0.69 -0.2
3,796,910 - ABID97_RS18380 0.69 +0.2

Or see this region's nucleotide sequence