Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17735

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS17725 and ABID97_RS17730 are separated by 1 nucleotidesABID97_RS17730 and ABID97_RS17735 are separated by 120 nucleotidesABID97_RS17735 and ABID97_RS17740 are separated by 127 nucleotidesABID97_RS17740 and ABID97_RS17745 overlap by 4 nucleotides ABID97_RS17725: ABID97_RS17725 - tripartite tricarboxylate transporter permease, at 3,664,726 to 3,666,241 _RS17725 ABID97_RS17730: ABID97_RS17730 - tripartite tricarboxylate transporter TctB family protein, at 3,666,243 to 3,666,779 _RS17730 ABID97_RS17735: ABID97_RS17735 - tripartite tricarboxylate transporter substrate binding protein, at 3,666,900 to 3,667,859 _RS17735 ABID97_RS17740: ABID97_RS17740 - response regulator transcription factor, at 3,667,987 to 3,668,667 _RS17740 ABID97_RS17745: ABID97_RS17745 - sensor histidine kinase, at 3,668,664 to 3,670,085 _RS17745 Position (kb) 3666 3667 3668Strain fitness (log2 ratio) -1 0 1 2 3at 3666.024 kb on + strand, within ABID97_RS17725at 3666.024 kb on + strand, within ABID97_RS17725at 3666.025 kb on - strand, within ABID97_RS17725at 3666.036 kb on + strand, within ABID97_RS17725at 3666.037 kb on - strand, within ABID97_RS17725at 3666.039 kb on + strand, within ABID97_RS17725at 3666.039 kb on + strand, within ABID97_RS17725at 3666.039 kb on + strand, within ABID97_RS17725at 3666.040 kb on - strand, within ABID97_RS17725at 3666.418 kb on + strand, within ABID97_RS17730at 3666.418 kb on + strand, within ABID97_RS17730at 3666.419 kb on - strand, within ABID97_RS17730at 3666.815 kb on - strandat 3666.881 kb on - strandat 3667.102 kb on + strand, within ABID97_RS17735at 3667.103 kb on - strand, within ABID97_RS17735at 3667.226 kb on - strand, within ABID97_RS17735at 3667.226 kb on - strand, within ABID97_RS17735at 3667.243 kb on + strand, within ABID97_RS17735at 3667.244 kb on - strand, within ABID97_RS17735at 3667.318 kb on + strand, within ABID97_RS17735at 3667.318 kb on + strand, within ABID97_RS17735at 3667.318 kb on + strand, within ABID97_RS17735at 3667.319 kb on - strand, within ABID97_RS17735at 3667.319 kb on - strand, within ABID97_RS17735at 3667.319 kb on - strand, within ABID97_RS17735at 3667.496 kb on - strand, within ABID97_RS17735at 3667.873 kb on + strandat 3667.874 kb on - strandat 3667.965 kb on + strandat 3667.966 kb on - strandat 3667.966 kb on - strandat 3668.278 kb on + strand, within ABID97_RS17740at 3668.278 kb on + strand, within ABID97_RS17740at 3668.278 kb on + strand, within ABID97_RS17740at 3668.279 kb on - strand, within ABID97_RS17740at 3668.279 kb on - strand, within ABID97_RS17740at 3668.422 kb on + strand, within ABID97_RS17740at 3668.423 kb on - strand, within ABID97_RS17740at 3668.423 kb on - strand, within ABID97_RS17740at 3668.423 kb on - strand, within ABID97_RS17740at 3668.557 kb on + strand, within ABID97_RS17740at 3668.558 kb on - strand, within ABID97_RS17740at 3668.581 kb on + strand, within ABID97_RS17740at 3668.582 kb on - strand, within ABID97_RS17740at 3668.582 kb on - strand, within ABID97_RS17740at 3668.645 kb on - strandat 3668.645 kb on - strandat 3668.645 kb on - strandat 3668.847 kb on + strand, within ABID97_RS17745at 3668.848 kb on - strand, within ABID97_RS17745

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,666,024 + ABID97_RS17725 0.86 +0.2
3,666,024 + ABID97_RS17725 0.86 -0.5
3,666,025 - ABID97_RS17725 0.86 +1.4
3,666,036 + ABID97_RS17725 0.86 -0.3
3,666,037 - ABID97_RS17725 0.86 -0.5
3,666,039 + ABID97_RS17725 0.87 -0.9
3,666,039 + ABID97_RS17725 0.87 -1.0
3,666,039 + ABID97_RS17725 0.87 +0.5
3,666,040 - ABID97_RS17725 0.87 -0.3
3,666,418 + ABID97_RS17730 0.33 +1.5
3,666,418 + ABID97_RS17730 0.33 -0.3
3,666,419 - ABID97_RS17730 0.33 +1.1
3,666,815 - +0.2
3,666,881 - -0.1
3,667,102 + ABID97_RS17735 0.21 +1.7
3,667,103 - ABID97_RS17735 0.21 +1.5
3,667,226 - ABID97_RS17735 0.34 +0.4
3,667,226 - ABID97_RS17735 0.34 +0.8
3,667,243 + ABID97_RS17735 0.36 +1.5
3,667,244 - ABID97_RS17735 0.36 +0.7
3,667,318 + ABID97_RS17735 0.44 +0.4
3,667,318 + ABID97_RS17735 0.44 +0.4
3,667,318 + ABID97_RS17735 0.44 +1.3
3,667,319 - ABID97_RS17735 0.44 +0.4
3,667,319 - ABID97_RS17735 0.44 +0.7
3,667,319 - ABID97_RS17735 0.44 +0.7
3,667,496 - ABID97_RS17735 0.62 +0.7
3,667,873 + +1.1
3,667,874 - +1.1
3,667,965 + -0.2
3,667,966 - -0.5
3,667,966 - +0.1
3,668,278 + ABID97_RS17740 0.43 +2.4
3,668,278 + ABID97_RS17740 0.43 +1.3
3,668,278 + ABID97_RS17740 0.43 +1.0
3,668,279 - ABID97_RS17740 0.43 +1.4
3,668,279 - ABID97_RS17740 0.43 +1.4
3,668,422 + ABID97_RS17740 0.64 +1.1
3,668,423 - ABID97_RS17740 0.64 +0.8
3,668,423 - ABID97_RS17740 0.64 +1.2
3,668,423 - ABID97_RS17740 0.64 +0.5
3,668,557 + ABID97_RS17740 0.84 +0.9
3,668,558 - ABID97_RS17740 0.84 +1.6
3,668,581 + ABID97_RS17740 0.87 +1.5
3,668,582 - ABID97_RS17740 0.87 -0.5
3,668,582 - ABID97_RS17740 0.87 +1.3
3,668,645 - +0.5
3,668,645 - +1.3
3,668,645 - +1.9
3,668,847 + ABID97_RS17745 0.13 +3.1
3,668,848 - ABID97_RS17745 0.13 +0.5

Or see this region's nucleotide sequence