Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16260

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16250 and ABID97_RS16255 are separated by 3 nucleotidesABID97_RS16255 and ABID97_RS16260 are separated by 4 nucleotidesABID97_RS16260 and ABID97_RS16265 overlap by 17 nucleotides ABID97_RS16250: ABID97_RS16250 - aldo/keto reductase, at 3,363,631 to 3,364,680 _RS16250 ABID97_RS16255: ABID97_RS16255 - dethiobiotin synthase, at 3,364,684 to 3,365,388 _RS16255 ABID97_RS16260: ABID97_RS16260 - 8-amino-7-oxononanoate synthase, at 3,365,393 to 3,366,613 _RS16260 ABID97_RS16265: ABID97_RS16265 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 3,366,597 to 3,367,991 _RS16265 Position (kb) 3365 3366 3367Strain fitness (log2 ratio) -1 0 1at 3365.163 kb on - strand, within ABID97_RS16255at 3365.791 kb on - strand, within ABID97_RS16260at 3365.791 kb on - strand, within ABID97_RS16260at 3366.255 kb on + strand, within ABID97_RS16260at 3366.256 kb on - strand, within ABID97_RS16260at 3366.447 kb on + strand, within ABID97_RS16260at 3366.724 kb on + strandat 3366.994 kb on + strand, within ABID97_RS16265at 3366.995 kb on - strand, within ABID97_RS16265at 3367.048 kb on + strand, within ABID97_RS16265at 3367.451 kb on - strand, within ABID97_RS16265

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,365,163 - ABID97_RS16255 0.68 +0.0
3,365,791 - ABID97_RS16260 0.33 -0.4
3,365,791 - ABID97_RS16260 0.33 -0.5
3,366,255 + ABID97_RS16260 0.71 +0.2
3,366,256 - ABID97_RS16260 0.71 -0.1
3,366,447 + ABID97_RS16260 0.86 +0.1
3,366,724 + -0.4
3,366,994 + ABID97_RS16265 0.28 -0.1
3,366,995 - ABID97_RS16265 0.29 +0.8
3,367,048 + ABID97_RS16265 0.32 +0.9
3,367,451 - ABID97_RS16265 0.61 -0.6

Or see this region's nucleotide sequence