Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16250 and ABID97_RS16255 are separated by 3 nucleotides ABID97_RS16255 and ABID97_RS16260 are separated by 4 nucleotides ABID97_RS16260 and ABID97_RS16265 overlap by 17 nucleotides
ABID97_RS16250: ABID97_RS16250 - aldo/keto reductase, at 3,363,631 to 3,364,680
_RS16250
ABID97_RS16255: ABID97_RS16255 - dethiobiotin synthase, at 3,364,684 to 3,365,388
_RS16255
ABID97_RS16260: ABID97_RS16260 - 8-amino-7-oxononanoate synthase, at 3,365,393 to 3,366,613
_RS16260
ABID97_RS16265: ABID97_RS16265 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 3,366,597 to 3,367,991
_RS16265
Position (kb)
3365
3366
3367 Strain fitness (log2 ratio)
-1
0
1 at 3365.163 kb on - strand, within ABID97_RS16255 at 3365.791 kb on - strand, within ABID97_RS16260 at 3365.791 kb on - strand, within ABID97_RS16260 at 3366.255 kb on + strand, within ABID97_RS16260 at 3366.256 kb on - strand, within ABID97_RS16260 at 3366.447 kb on + strand, within ABID97_RS16260 at 3366.724 kb on + strand at 3366.994 kb on + strand, within ABID97_RS16265 at 3366.995 kb on - strand, within ABID97_RS16265 at 3367.048 kb on + strand, within ABID97_RS16265 at 3367.451 kb on - strand, within ABID97_RS16265
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 3,365,163 - ABID97_RS16255 0.68 +0.0 3,365,791 - ABID97_RS16260 0.33 -0.4 3,365,791 - ABID97_RS16260 0.33 -0.5 3,366,255 + ABID97_RS16260 0.71 +0.2 3,366,256 - ABID97_RS16260 0.71 -0.1 3,366,447 + ABID97_RS16260 0.86 +0.1 3,366,724 + -0.4 3,366,994 + ABID97_RS16265 0.28 -0.1 3,366,995 - ABID97_RS16265 0.29 +0.8 3,367,048 + ABID97_RS16265 0.32 +0.9 3,367,451 - ABID97_RS16265 0.61 -0.6
Or see this region's nucleotide sequence