Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16255

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16250 and ABID97_RS16255 are separated by 3 nucleotidesABID97_RS16255 and ABID97_RS16260 are separated by 4 nucleotides ABID97_RS16250: ABID97_RS16250 - aldo/keto reductase, at 3,363,631 to 3,364,680 _RS16250 ABID97_RS16255: ABID97_RS16255 - dethiobiotin synthase, at 3,364,684 to 3,365,388 _RS16255 ABID97_RS16260: ABID97_RS16260 - 8-amino-7-oxononanoate synthase, at 3,365,393 to 3,366,613 _RS16260 Position (kb) 3364 3365 3366Strain fitness (log2 ratio) -1 0 1at 3364.012 kb on + strand, within ABID97_RS16250at 3364.012 kb on + strand, within ABID97_RS16250at 3364.013 kb on - strand, within ABID97_RS16250at 3364.196 kb on - strand, within ABID97_RS16250at 3364.196 kb on - strand, within ABID97_RS16250at 3364.196 kb on - strand, within ABID97_RS16250at 3364.198 kb on + strand, within ABID97_RS16250at 3364.198 kb on + strand, within ABID97_RS16250at 3364.199 kb on - strand, within ABID97_RS16250at 3364.388 kb on - strand, within ABID97_RS16250at 3365.163 kb on - strand, within ABID97_RS16255at 3365.791 kb on - strand, within ABID97_RS16260at 3365.791 kb on - strand, within ABID97_RS16260at 3366.255 kb on + strand, within ABID97_RS16260at 3366.256 kb on - strand, within ABID97_RS16260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,364,012 + ABID97_RS16250 0.36 -0.6
3,364,012 + ABID97_RS16250 0.36 -0.4
3,364,013 - ABID97_RS16250 0.36 -0.2
3,364,196 - ABID97_RS16250 0.54 -0.2
3,364,196 - ABID97_RS16250 0.54 -0.1
3,364,196 - ABID97_RS16250 0.54 +0.2
3,364,198 + ABID97_RS16250 0.54 -0.5
3,364,198 + ABID97_RS16250 0.54 -0.4
3,364,199 - ABID97_RS16250 0.54 +1.0
3,364,388 - ABID97_RS16250 0.72 -0.9
3,365,163 - ABID97_RS16255 0.68 +0.0
3,365,791 - ABID97_RS16260 0.33 -0.4
3,365,791 - ABID97_RS16260 0.33 -0.5
3,366,255 + ABID97_RS16260 0.71 +0.2
3,366,256 - ABID97_RS16260 0.71 -0.1

Or see this region's nucleotide sequence