Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16045

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16040 and ABID97_RS16045 are separated by 24 nucleotidesABID97_RS16045 and ABID97_RS16050 overlap by 4 nucleotidesABID97_RS16050 and ABID97_RS16055 are separated by 20 nucleotides ABID97_RS16040: ABID97_RS16040 - protein kinase, at 3,322,583 to 3,324,316 _RS16040 ABID97_RS16045: ABID97_RS16045 - SDR family oxidoreductase, at 3,324,341 to 3,325,123 _RS16045 ABID97_RS16050: ABID97_RS16050 - isochorismatase family cysteine hydrolase, at 3,325,120 to 3,325,692 _RS16050 ABID97_RS16055: ABID97_RS16055 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 3,325,713 to 3,326,198 _RS16055 Position (kb) 3324 3325 3326Strain fitness (log2 ratio) -1 0 1at 3323.399 kb on - strand, within ABID97_RS16040at 3323.442 kb on - strand, within ABID97_RS16040at 3323.612 kb on + strand, within ABID97_RS16040at 3323.613 kb on - strand, within ABID97_RS16040at 3323.880 kb on + strand, within ABID97_RS16040at 3323.880 kb on + strand, within ABID97_RS16040at 3324.054 kb on - strand, within ABID97_RS16040at 3325.257 kb on - strand, within ABID97_RS16050at 3325.437 kb on - strand, within ABID97_RS16050at 3325.964 kb on - strand, within ABID97_RS16055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,323,399 - ABID97_RS16040 0.47 -0.5
3,323,442 - ABID97_RS16040 0.50 -0.4
3,323,612 + ABID97_RS16040 0.59 +1.1
3,323,613 - ABID97_RS16040 0.59 +0.3
3,323,880 + ABID97_RS16040 0.75 +0.7
3,323,880 + ABID97_RS16040 0.75 +1.1
3,324,054 - ABID97_RS16040 0.85 +0.6
3,325,257 - ABID97_RS16050 0.24 +0.4
3,325,437 - ABID97_RS16050 0.55 -1.4
3,325,964 - ABID97_RS16055 0.52 -0.2

Or see this region's nucleotide sequence