Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15310

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15305 and ABID97_RS15310 are separated by 10 nucleotidesABID97_RS15310 and ABID97_RS15315 overlap by 4 nucleotidesABID97_RS15315 and ABID97_RS15320 are separated by 54 nucleotides ABID97_RS15305: ABID97_RS15305 - TonB-dependent siderophore receptor, at 3,165,994 to 3,168,150 _RS15305 ABID97_RS15310: ABID97_RS15310 - thiamine phosphate synthase, at 3,168,161 to 3,169,093 _RS15310 ABID97_RS15315: ABID97_RS15315 - thiazole synthase, at 3,169,090 to 3,169,893 _RS15315 ABID97_RS15320: ABID97_RS15320 - sulfur carrier protein ThiS, at 3,169,948 to 3,170,151 _RS15320 Position (kb) 3168 3169 3170Strain fitness (log2 ratio) -1 0 1 2at 3167.186 kb on + strand, within ABID97_RS15305at 3167.663 kb on + strand, within ABID97_RS15305at 3167.663 kb on + strand, within ABID97_RS15305at 3167.664 kb on - strand, within ABID97_RS15305at 3167.664 kb on - strand, within ABID97_RS15305at 3167.664 kb on - strand, within ABID97_RS15305at 3167.859 kb on - strand, within ABID97_RS15305at 3167.859 kb on - strand, within ABID97_RS15305at 3167.859 kb on - strand, within ABID97_RS15305at 3168.424 kb on - strand, within ABID97_RS15310at 3168.424 kb on - strand, within ABID97_RS15310at 3168.969 kb on + strand, within ABID97_RS15310at 3169.065 kb on - strandat 3169.275 kb on - strand, within ABID97_RS15315at 3169.481 kb on + strand, within ABID97_RS15315at 3169.481 kb on + strand, within ABID97_RS15315at 3169.559 kb on + strand, within ABID97_RS15315at 3169.820 kb on + strandat 3169.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,167,186 + ABID97_RS15305 0.55 -0.1
3,167,663 + ABID97_RS15305 0.77 -0.3
3,167,663 + ABID97_RS15305 0.77 -0.5
3,167,664 - ABID97_RS15305 0.77 -0.3
3,167,664 - ABID97_RS15305 0.77 -1.1
3,167,664 - ABID97_RS15305 0.77 -0.0
3,167,859 - ABID97_RS15305 0.86 -0.9
3,167,859 - ABID97_RS15305 0.86 -0.2
3,167,859 - ABID97_RS15305 0.86 -0.0
3,168,424 - ABID97_RS15310 0.28 -0.2
3,168,424 - ABID97_RS15310 0.28 -0.8
3,168,969 + ABID97_RS15310 0.87 -0.7
3,169,065 - +0.3
3,169,275 - ABID97_RS15315 0.23 +1.8
3,169,481 + ABID97_RS15315 0.49 +0.0
3,169,481 + ABID97_RS15315 0.49 -1.0
3,169,559 + ABID97_RS15315 0.58 +0.5
3,169,820 + +0.7
3,169,933 + +0.2

Or see this region's nucleotide sequence