Experiment: D-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15035 and ABID97_RS15040 are separated by 1 nucleotides ABID97_RS15040 and ABID97_RS15045 overlap by 4 nucleotides ABID97_RS15045 and ABID97_RS15050 overlap by 4 nucleotides ABID97_RS15050 and ABID97_RS15055 are separated by 26 nucleotides
ABID97_RS15035: ABID97_RS15035 - tyrosine-type recombinase/integrase, at 3,123,337 to 3,124,467
_RS15035
ABID97_RS15040: ABID97_RS15040 - hypothetical protein, at 3,124,469 to 3,124,786
_RS15040
ABID97_RS15045: ABID97_RS15045 - DNA cytosine methyltransferase, at 3,124,783 to 3,126,573
_RS15045
ABID97_RS15050: ABID97_RS15050 - hypothetical protein, at 3,126,570 to 3,127,271
_RS15050
ABID97_RS15055: ABID97_RS15055 - hypothetical protein, at 3,127,298 to 3,127,573
_RS15055
Position (kb) 3124
3125
3126
3127 Strain fitness (log2 ratio) -1
0
1 at 3123.840 kb on - strand, within ABID97_RS15035 at 3123.974 kb on + strand, within ABID97_RS15035 at 3123.974 kb on + strand, within ABID97_RS15035 at 3124.278 kb on - strand, within ABID97_RS15035 at 3124.385 kb on + strand at 3124.386 kb on - strand at 3124.391 kb on + strand at 3124.391 kb on + strand at 3124.471 kb on - strand at 3124.520 kb on + strand, within ABID97_RS15040 at 3124.520 kb on + strand, within ABID97_RS15040 at 3124.521 kb on - strand, within ABID97_RS15040 at 3125.255 kb on + strand, within ABID97_RS15045 at 3125.256 kb on - strand, within ABID97_RS15045 at 3125.361 kb on - strand, within ABID97_RS15045 at 3125.361 kb on - strand, within ABID97_RS15045 at 3125.361 kb on - strand, within ABID97_RS15045 at 3126.362 kb on + strand, within ABID97_RS15045 at 3126.363 kb on - strand, within ABID97_RS15045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Arabinose (C) remove 3,123,840 - ABID97_RS15035 0.44 +0.9 3,123,974 + ABID97_RS15035 0.56 +0.1 3,123,974 + ABID97_RS15035 0.56 +0.6 3,124,278 - ABID97_RS15035 0.83 +0.1 3,124,385 + +0.5 3,124,386 - +0.2 3,124,391 + +1.2 3,124,391 + +0.4 3,124,471 - +0.2 3,124,520 + ABID97_RS15040 0.16 -0.1 3,124,520 + ABID97_RS15040 0.16 +0.2 3,124,521 - ABID97_RS15040 0.16 +0.5 3,125,255 + ABID97_RS15045 0.26 +1.7 3,125,256 - ABID97_RS15045 0.26 +0.9 3,125,361 - ABID97_RS15045 0.32 -1.2 3,125,361 - ABID97_RS15045 0.32 +0.9 3,125,361 - ABID97_RS15045 0.32 -0.2 3,126,362 + ABID97_RS15045 0.88 +1.1 3,126,363 - ABID97_RS15045 0.88 +0.7
Or see this region's nucleotide sequence