Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14760

Experiment: D-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14755 and ABID97_RS14760 are separated by 64 nucleotidesABID97_RS14760 and ABID97_RS14765 are separated by 69 nucleotides ABID97_RS14755: ABID97_RS14755 - 'GTP 3',8-cyclase MoaA' pseudo=_no_value transl_table=11, at 3,068,340 to 3,069,495 _RS14755 ABID97_RS14760: ABID97_RS14760 - SDR family oxidoreductase, at 3,069,560 to 3,070,321 _RS14760 ABID97_RS14765: ABID97_RS14765 - aldehyde dehydrogenase family protein, at 3,070,391 to 3,071,825 _RS14765 Position (kb) 3069 3070 3071Strain fitness (log2 ratio) -1 0 1 2at 3068.798 kb on + strand, within ABID97_RS14755at 3068.798 kb on + strand, within ABID97_RS14755at 3068.798 kb on + strand, within ABID97_RS14755at 3068.799 kb on - strand, within ABID97_RS14755at 3068.799 kb on - strand, within ABID97_RS14755at 3068.847 kb on - strand, within ABID97_RS14755at 3068.863 kb on + strand, within ABID97_RS14755at 3068.864 kb on - strand, within ABID97_RS14755at 3069.282 kb on - strand, within ABID97_RS14755at 3069.321 kb on - strand, within ABID97_RS14755at 3069.321 kb on - strand, within ABID97_RS14755at 3069.321 kb on - strand, within ABID97_RS14755at 3069.321 kb on - strand, within ABID97_RS14755at 3069.513 kb on - strandat 3069.593 kb on + strandat 3069.593 kb on + strandat 3069.594 kb on - strandat 3069.594 kb on - strandat 3069.630 kb on + strandat 3069.631 kb on - strandat 3069.966 kb on + strand, within ABID97_RS14760at 3069.967 kb on - strand, within ABID97_RS14760at 3069.967 kb on - strand, within ABID97_RS14760at 3069.990 kb on + strand, within ABID97_RS14760at 3069.991 kb on - strand, within ABID97_RS14760at 3070.339 kb on + strandat 3070.434 kb on + strandat 3070.434 kb on + strandat 3070.435 kb on - strandat 3070.519 kb on + strandat 3070.519 kb on + strandat 3070.519 kb on + strandat 3070.520 kb on - strandat 3070.747 kb on + strand, within ABID97_RS14765at 3070.747 kb on + strand, within ABID97_RS14765at 3070.747 kb on + strand, within ABID97_RS14765at 3070.748 kb on - strand, within ABID97_RS14765at 3070.748 kb on - strand, within ABID97_RS14765at 3070.748 kb on - strand, within ABID97_RS14765at 3070.748 kb on - strand, within ABID97_RS14765at 3070.948 kb on + strand, within ABID97_RS14765at 3070.949 kb on - strand, within ABID97_RS14765at 3070.949 kb on - strand, within ABID97_RS14765at 3070.949 kb on - strand, within ABID97_RS14765at 3070.949 kb on - strand, within ABID97_RS14765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Arabinose (C)
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3,068,798 + ABID97_RS14755 0.40 +0.5
3,068,798 + ABID97_RS14755 0.40 -1.0
3,068,798 + ABID97_RS14755 0.40 +0.3
3,068,799 - ABID97_RS14755 0.40 +1.0
3,068,799 - ABID97_RS14755 0.40 +0.7
3,068,847 - ABID97_RS14755 0.44 +0.3
3,068,863 + ABID97_RS14755 0.45 -0.5
3,068,864 - ABID97_RS14755 0.45 +0.2
3,069,282 - ABID97_RS14755 0.81 +0.9
3,069,321 - ABID97_RS14755 0.85 -0.1
3,069,321 - ABID97_RS14755 0.85 -0.0
3,069,321 - ABID97_RS14755 0.85 +0.8
3,069,321 - ABID97_RS14755 0.85 +0.5
3,069,513 - -0.2
3,069,593 + +0.2
3,069,593 + +0.1
3,069,594 - +0.3
3,069,594 - -0.1
3,069,630 + +0.6
3,069,631 - +1.0
3,069,966 + ABID97_RS14760 0.53 +0.8
3,069,967 - ABID97_RS14760 0.53 +0.2
3,069,967 - ABID97_RS14760 0.53 +0.5
3,069,990 + ABID97_RS14760 0.56 +1.4
3,069,991 - ABID97_RS14760 0.57 +0.0
3,070,339 + +0.0
3,070,434 + +0.5
3,070,434 + +0.6
3,070,435 - +0.0
3,070,519 + -0.2
3,070,519 + +1.9
3,070,519 + -0.3
3,070,520 - +0.2
3,070,747 + ABID97_RS14765 0.25 +0.1
3,070,747 + ABID97_RS14765 0.25 +1.2
3,070,747 + ABID97_RS14765 0.25 +0.5
3,070,748 - ABID97_RS14765 0.25 +0.3
3,070,748 - ABID97_RS14765 0.25 +0.0
3,070,748 - ABID97_RS14765 0.25 +1.2
3,070,748 - ABID97_RS14765 0.25 +0.9
3,070,948 + ABID97_RS14765 0.39 +0.6
3,070,949 - ABID97_RS14765 0.39 +0.4
3,070,949 - ABID97_RS14765 0.39 +1.1
3,070,949 - ABID97_RS14765 0.39 +0.1
3,070,949 - ABID97_RS14765 0.39 +0.4

Or see this region's nucleotide sequence